| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,263,706 – 9,263,806 |
| Length | 100 |
| Max. P | 0.817942 |
| Location | 9,263,706 – 9,263,806 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 66.46 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -7.44 |
| Energy contribution | -7.80 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9263706 100 + 23771897 CAGAUGGAAAUGGAGUGUGUGUGUGUGCGGGGUGAAAGAUGUGGGGUCGAGAAAACACCACCAUUUCUUUCCCCAAAUAUGCUCGUCCCAUUGCAAAACU ....((..(((((..((.((((((.....(((.((((((.(((((((.(......)))).)))).)))))))))..)))))).))..))))).))..... ( -33.50) >DroSec_CAF1 110462 76 + 1 CAGAUGGAAAUGGAGUGUGUG-------GUGGUGGAAGAUUUGUGGUAGAGAAAACUCCACCAUUUCUU-----------------CCCAUUCCAAAACU ..........(((((((....-------.....((((((...(((((.(((....))).))))).))))-----------------)))))))))..... ( -24.00) >DroSim_CAF1 110745 78 + 1 CAGAUGGAAAUGGAGUGUGUG-------G---------------GGUAGAGAAAACUCCACCAUUUCUUUCCCCAAAUAUGCUCUUUCCAUUCUAAAACU ..(((((((..((((((((((-------(---------------((.(((((((.........))))))))))))..)))))))))))))))........ ( -27.30) >DroEre_CAF1 133299 93 + 1 CAGAUGGAAAUGAAGUGUGUG-------GGGAUGGCAGACGUUGGGUCGAGUGAGCUCCACCAUUCCAGUCCCCAAACAUGCUCCUCCCAUCCCAAAACU ..(((((....((.((((.((-------((((((((....))).(((.(((....))).)))......))))))).))))..))...)))))........ ( -29.70) >DroYak_CAF1 128619 79 + 1 CAGAUGGAAAUGGAGUGUGUGUGUGU--GGGUUGCAAGAUGCUGGGUCGAGUAAGCUCCACCAUUUCCUU-------------------UACCCAAAAAU ....(((....((((...(((.(((.--.(.((((..(((.....)))..)))).)..))))))))))..-------------------...)))..... ( -18.40) >consensus CAGAUGGAAAUGGAGUGUGUG_______GGGGUGGAAGAUGUGGGGUCGAGAAAACUCCACCAUUUCUUUCCCCAAA_AUGCUC_UCCCAUUCCAAAACU .((((((...((((((......................................)))))))))))).................................. ( -7.44 = -7.80 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:29 2006