| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,257,730 – 9,257,839 |
| Length | 109 |
| Max. P | 0.771883 |
| Location | 9,257,730 – 9,257,839 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 70.15 |
| Mean single sequence MFE | -26.56 |
| Consensus MFE | -11.90 |
| Energy contribution | -12.26 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9257730 109 + 23771897 UCUAUAUAUUUGGGUAUACUCGUAUACUAUGUACGUUCAUAUAUAACUACGACAACCGUUGGUAGCCGACUAGGCACUCGGU-UUCAGCAUUAUACUGAUGGAUAUCUGG .........(..(((((..(((((...((((((......))))))..)))))...((((..((((((.....))).....((-....))....)))..)))))))))..) ( -25.10) >DroSec_CAF1 104482 109 + 1 UCUAUAUAUUUGGGCAUACUCGUAUAUUAUGUACGUUCAUAUAUAACUCCGACAGCCAUUAGUAGCCGACUAGGCACUCGGU-UUCAGCAUCCUACUGAUGGAUGUCUGG ....(((((.(((((.(((...........))).))))).)))))...((((((.((((((((((((.....)))....((.-........))))))))))).)))).)) ( -31.20) >DroSim_CAF1 104740 109 + 1 UCUAUAUAUUUGGGCAUACUCGUAUACUAUGUACGUUCAUAUAUAACUCCGACAGCCAUUGGUAGCCCACUAGGCACUCGGU-UUCAGCAUCCUACUGAUGGAUGUCUGG ....(((((.(((((.(((...........))).))))).)))))...((((..(((..(((....)))...)))..)))).-..((((((((.......))))).))). ( -29.50) >DroYak_CAF1 122251 94 + 1 UCUAUAUAUUUGGGUAUACAUACAUACUAUGUA----------UAUCUCCAACAACAGUUGGUAGUCAACUAGGCACUUGGUUUUCAGCAUUAUGCUGAUGGUU------ ...........(((((((((((.....))))))----------)))))(((((....))))).....((((((....)))))).(((((.....))))).....------ ( -23.60) >DroAna_CAF1 105787 84 + 1 AGUAUAU----------------AUAUUAUAUACAUACAUU---------CACAGCCGAUGGCAGGCGAGCAGUGCCUCGAU-UCGAGCAUUAUGCUGAUGGAUGUCCGG .((((((----------------(...)))))))..(((((---------((..(((.......))).((((((((.(((..-.)))))))..))))..))))))).... ( -23.40) >consensus UCUAUAUAUUUGGGCAUACUCGUAUACUAUGUACGUUCAUAUAUAACUCCGACAGCCGUUGGUAGCCGACUAGGCACUCGGU_UUCAGCAUUAUACUGAUGGAUGUCUGG ..................................................((((.((((((((((((.....)))....(........)....))))))))).))))... (-11.90 = -12.26 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:24 2006