Locus 3174

Sequence ID 3L_DroMel_CAF1
Location 9,252,585 – 9,252,705
Length 120
Max. P 0.711832
window4949

overview

Window 9

Location 9,252,585 – 9,252,705
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -33.22
Consensus MFE -30.10
Energy contribution -30.05
Covariance contribution -0.05
Combinations/Pair 1.06
Mean z-score -1.19
Structure conservation index 0.91
SVM decision value 0.38
SVM RNA-class probability 0.711832
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9252585 120 - 23771897
UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUGGAGAUGCCCAGCGACAUGAACGGCUUGCUGAAGUC
................((((.......))))((((..((((((..(((((.((((((((.(.(((.(((........)))))).).)))))))).)))...))..))))))..))))... ( -36.50)
>DroVir_CAF1 149356 120 - 1
UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUUUGCUUCACUGGUUUCUUAAUCAUGAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC
.....(((.((.....((((.......))))((((((..(.....).(((.((((((((.(.(((.(((((....)))))))).).)))))))).))).)))))).))..)))....... ( -36.00)
>DroPse_CAF1 112453 120 - 1
UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACUCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUUGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC
.....(((.((.....((((.......))))((((((..(((((....)).((((((..(((.....))).......(((....))).)))))))))..)))))).))..)))....... ( -29.50)
>DroGri_CAF1 97602 120 - 1
UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUUUGCUUCACUGGCUUCUUAAUCAUGAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUGAAGUC
................((((.......))))((((..((((((..(((((.((((((((.(.(((.(((........)))))).).)))))))).)))...))..))))))..))))... ( -33.80)
>DroMoj_CAF1 115856 120 - 1
UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUUUGCUUCACUGGCUUCUUAAUCAUAAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC
....(((......((((((((((((.(((((..((((((((.....((((...))))..)))))).))..))))).))))))..)))))).....)))........(((((....))))) ( -34.00)
>DroPer_CAF1 112531 120 - 1
UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACUCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUUGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC
.....(((.((.....((((.......))))((((((..(((((....)).((((((..(((.....))).......(((....))).)))))))))..)))))).))..)))....... ( -29.50)
>consensus
UAUACGCACCCAAAUUUCCUGUGAUAAAGGAUUCAUGAAGCUGAACACGCCGGGCGUCUGCUUCACUGGCUUCUUAAUCAUGAUGGAAAUGCCCAGCGACAUGAACGGCUUGCUAAAGUC
....(((......((((((.(((((.(((((..((((((((.((...(....)...)).)))))).))..))))).)))))...)))))).....)))........(((((....))))) (-30.10 = -30.05 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006