Locus 3171

Sequence ID 3L_DroMel_CAF1
Location 9,219,537 – 9,219,631
Length 94
Max. P 0.688861
window4946

overview

Window 6

Location 9,219,537 – 9,219,631
Length 94
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 70.68
Mean single sequence MFE -19.75
Consensus MFE -2.89
Energy contribution -4.41
Covariance contribution 1.52
Combinations/Pair 1.15
Mean z-score -1.76
Structure conservation index 0.15
SVM decision value 0.32
SVM RNA-class probability 0.688861
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9219537 94 + 23771897
UGCACU-----GC-GCCAGGACCACCGUGAA-AAAUAUAAUUCUUUAAAUAGCUCCCACCCACAUUAUAAGAUACAUCUCCGGAGUC--CUGGCAUCCCGACC
......-----..-((((((((..(((.((.-...((((((......................)))))).((....))))))).)))--)))))......... ( -19.65)
>DroSec_CAF1 74223 94 + 1
UGCACU-----GU-GCCAGGACCUCCGUGAAUAAAUAUAAUUCUUUAAAUAGCUCCCACCCACUU-UUAAGAUACAUCUCUGGAGUC--CUGGCAUCCAGACC
....((-----((-((((((((.(((..((((.......))))......................-...(((......)))))))))--))))))..)))... ( -24.60)
>DroSim_CAF1 74042 94 + 1
UGCACU-----GU-GCCAGGACCUCCGUGAAAAAAUAUAAUUCUUUAAAUAGCUCCCACCCACUU-UUAAGAUACAUCUCUGGAGUC--CUGGCAUCCCGACC
......-----((-((((((((.((((((...............................)))..-...(((......)))))))))--)))))))....... ( -22.68)
>DroEre_CAF1 91055 78 + 1
C-----CU----------------CAGUGGA-AAAUAUAAUUCCUUAAAUUGCUACCACGCGCUU-UAAGGAUACAGCUCUGCAGUC--UUGGCAUUCCGUGC
.-----..----------------....(((-(........((((((((.(((......))).))-))))))....(((..(....)--..))).)))).... ( -16.90)
>DroYak_CAF1 90460 90 + 1
UUCUCCCUUAUGUGGCCAGUGCUGAAGUGAA-AAAUAAAAUUCCUUAAAUAGC----------UC-GAAAGAUACAUCUCUGGAGUCUCUUGGCAUCCCG-AC
..((((...(((((......(((((((.(((-........))))))...))))----------((-....)))))))....))))....((((....)))-). ( -14.90)
>consensus
UGCACU_____GU_GCCAGGACCUCCGUGAA_AAAUAUAAUUCUUUAAAUAGCUCCCACCCACUU_UUAAGAUACAUCUCUGGAGUC__CUGGCAUCCCGACC
..............(((((.........(((.........)))........(((((.........................)))))...)))))......... ( -2.89 =  -4.41 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:18 2006