Locus 3161

Sequence ID 3L_DroMel_CAF1
Location 9,194,599 – 9,194,708
Length 109
Max. P 0.591527
window4932

overview

Window 2

Location 9,194,599 – 9,194,708
Length 109
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 89.18
Mean single sequence MFE -31.42
Consensus MFE -23.60
Energy contribution -25.04
Covariance contribution 1.44
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.75
SVM decision value 0.12
SVM RNA-class probability 0.591527
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9194599 109 + 23771897
AGCUGCUAAAUGGUGCAGAAAGUUCACAGGGUU------AGCCCUGGCUAUUCCUUGGUGCCAACUUCUACAUUU-UUGUAUGGCAUGCAUUAAACUACUCUCGUGGCAACACGGC
.(((((((..(((..(.((....)).(((((.(------(((....))))..))))))..))).....((((...-.))))))))).))............(((((....))))). ( -36.10)
>DroSec_CAF1 48629 110 + 1
AGCUGCUAAAUGGCUCAGAAAGUUCACAGGAUU------AGUCCUGGCUAUUCUUCGGUCCCAACUUCUACAUUUUUUGUACGGCAUGCAUUAAACUUCUCUCGUGGCAAAACGGC
.((((((....((((.(((((((...(((((..------..)))))))).))))..))))........((((.....)))).)))).))............((((......)))). ( -22.30)
>DroSim_CAF1 49119 109 + 1
AGCUGCUAAAUGGCCCAGAAAGUUCACAGGGUU------AGCCCUGGCUAUUAUUCGGUGCCAACUUCUACAUUU-UUGUACGGCAUGCAUUAAACUUCUCUCGUGGCAACACGGC
.((((((...((((((.((((((...(((((..------..)))))...))).))))).)))).....((((...-.)))).)))).))............(((((....))))). ( -35.60)
>DroEre_CAF1 66091 115 + 1
AGCUGCUAAAUGGCCCAGAAAGUUCACAGGGUUAUUCCUAGCCCUGGCUAUUCCUCGGUGCCAGCUUCUACAUUU-UUUUAUGGCCUGCAUUAAACUCUUUUCGUGGCAACACGGC
.((.((....((((((.((.(((...((((((((....))))))))...)))..)))).)))).......(((..-....)))))..))............(((((....))))). ( -33.10)
>DroYak_CAF1 65145 109 + 1
AGCUGCUAAAUGGACCAGAAAGUUCACAGGGUU------AGCGCCGGCUAUUCUUCGGGGCCAACUUCUACAUUU-UUUUAUGGCAUGCAUUAAACUUCUUUCGUGGCAACACGGC
.(((((((..(((((......)))))..(((((------.((.((((.......)))).)).)))))........-.....))))).))............(((((....))))). ( -30.00)
>consensus
AGCUGCUAAAUGGCCCAGAAAGUUCACAGGGUU______AGCCCUGGCUAUUCUUCGGUGCCAACUUCUACAUUU_UUGUAUGGCAUGCAUUAAACUUCUCUCGUGGCAACACGGC
.((((((...((((.(.((((((...(((((((......)))))))...))).))).).)))).....((((.....)))).)))).))............(((((....))))). (-23.60 = -25.04 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:04 2006