| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 925,713 – 925,803 |
| Length | 90 |
| Max. P | 0.989975 |
| Location | 925,713 – 925,803 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.02 |
| Mean single sequence MFE | -28.76 |
| Consensus MFE | -11.22 |
| Energy contribution | -13.54 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.24 |
| Mean z-score | -3.15 |
| Structure conservation index | 0.39 |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.989975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 925713 90 + 23771897 AA----AGAGAAAAAUUAGCUGCCCAUAAUGUGAUUUCGAUUGC---GGCAAGGUUGGAGCGAA-ACU-UCAACUGCGCUGCACUUAAUGGAGCAGCAG ..----............(((((((((....((....))..(((---(((..((((((((....-.))-))))))..))))))....)))).))))).. ( -32.20) >DroSim_CAF1 52696 89 + 1 AA----AGAGAAAAAUUAGCUGGCCAUAAUGCGAUUUCGAUUGC---GGCAAGG-UGGAGCGCA-ACU-UCAGCUGCGCUGCACUUAAUGGAGCAGCUG ..----..........((((((.((((..((((((....)))))---)...(((-((.((((((-.(.-...).)))))).))))).))))..)))))) ( -33.00) >DroEre_CAF1 63164 90 + 1 AA----AGAAAAAAAUUAGCUGCCCAUAAUGCGAUUUCGAUUGC---GGCAAGGUUGGAGCGAA-ACU-UUAACUGAGCUGCACUUAAUGGGGCAGCUG ..----..........(((((((((......((....))..(((---(((..((((((((....-.))-))))))..)))))).......))))))))) ( -34.90) >DroYak_CAF1 62350 94 + 1 AAAGAGAGAGAAAAAUUAGCUGCCCAUAAUGCGAUUUCGAUUGC---GGCAAGGUUCGAGCGAA-ACU-UUAACUGCGCUGCACUUAAUGGAGCAGCUG ................(((((((((((....((....))..(((---(((..((((.(((....-.))-).))))..))))))....)))).))))))) ( -29.60) >DroAna_CAF1 65820 88 + 1 AA----AAAAAAA--GAAACUG----AAAUGCAAUUUCAAUUGCCAGGAUAUGGU-UAACCGAAAACUUUUAUUUCCCCAGCACUUAAUGGAGCGGCAG ..----.......--((((.((----.....)).))))...((((.((....((.-...))((((.......)))).)).((.((....)).)))))). ( -14.10) >consensus AA____AGAGAAAAAUUAGCUGCCCAUAAUGCGAUUUCGAUUGC___GGCAAGGUUGGAGCGAA_ACU_UUAACUGCGCUGCACUUAAUGGAGCAGCUG ..................(((((((((...(((((....)))))...(((..((((((((......)).))))))..))).......)))).))))).. (-11.22 = -13.54 + 2.32)
| Location | 925,713 – 925,803 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.02 |
| Mean single sequence MFE | -23.91 |
| Consensus MFE | -10.68 |
| Energy contribution | -13.16 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 925713 90 - 23771897 CUGCUGCUCCAUUAAGUGCAGCGCAGUUGA-AGU-UUCGCUCCAACCUUGCC---GCAAUCGAAAUCACAUUAUGGGCAGCUAAUUUUUCUCU----UU ..(((((.((((....(((.(((..((((.-((.-....)).))))..))).---)))..............)))))))))............----.. ( -23.57) >DroSim_CAF1 52696 89 - 1 CAGCUGCUCCAUUAAGUGCAGCGCAGCUGA-AGU-UGCGCUCCA-CCUUGCC---GCAAUCGAAAUCGCAUUAUGGCCAGCUAAUUUUUCUCU----UU .(((((.........(((.((((((((...-.))-)))))).))-)...(((---(.(((((....)).))).)))))))))...........----.. ( -29.80) >DroEre_CAF1 63164 90 - 1 CAGCUGCCCCAUUAAGUGCAGCUCAGUUAA-AGU-UUCGCUCCAACCUUGCC---GCAAUCGAAAUCGCAUUAUGGGCAGCUAAUUUUUUUCU----UU .((((((((.......(((.((...(((..-((.-....))..)))...)).---)))..((....))......))))))))...........----.. ( -23.00) >DroYak_CAF1 62350 94 - 1 CAGCUGCUCCAUUAAGUGCAGCGCAGUUAA-AGU-UUCGCUCGAACCUUGCC---GCAAUCGAAAUCGCAUUAUGGGCAGCUAAUUUUUCUCUCUCUUU .((((((.((((..(((((.((((((((..-((.-....))..)))..)).)---))....(....))))))))))))))))................. ( -25.80) >DroAna_CAF1 65820 88 - 1 CUGCCGCUCCAUUAAGUGCUGGGGAAAUAAAAGUUUUCGGUUA-ACCAUAUCCUGGCAAUUGAAAUUGCAUUU----CAGUUUC--UUUUUUU----UU ................(((..((((((.......))))((...-.))....))..)))...(((((((.....----)))))))--.......----.. ( -17.40) >consensus CAGCUGCUCCAUUAAGUGCAGCGCAGUUAA_AGU_UUCGCUCCAACCUUGCC___GCAAUCGAAAUCGCAUUAUGGGCAGCUAAUUUUUCUCU____UU ..(((((.((((..(((((((((..............))))......((((....))))........)))))))))))))).................. (-10.68 = -13.16 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:05 2006