| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 924,602 – 924,701 |
| Length | 99 |
| Max. P | 0.703061 |
| Location | 924,602 – 924,701 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 86.22 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -17.85 |
| Energy contribution | -17.97 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703061 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 924602 99 - 23771897 ------UUCUGAGUGCAACCUCUUUUGUUGCAUCUUUAUCUGCGACGUUUUGUUUCUAAGUAUUUGAAGUAUAGGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC ------...((((((((((((.....((((((........))))))......((((.........))))...))))).((....)))))))))............ ( -19.60) >DroSec_CAF1 58687 102 - 1 UAAAAAUUCUGAAUGCAACCUG---CAUUGCAUCUAAACCUGCGACGUUUUGUUUCUAAAUAUUUCAAGUAAAUGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC .....(((..(((.((((...(---(.(((((........))))).)).)))))))..))).(((((..(((((((..((....)))))))))..)))))..... ( -21.60) >DroSim_CAF1 51578 102 - 1 UAAAAAUUCUGAAUGCAACCUG---CAUUGCAUCUAAACCUGCGACGUUUUGUUUCUAAAUAUUUCAGGUAGAUGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC .....(((..(((.((((...(---(.(((((........))))).)).)))))))..))).((((((((((((((..((....))))))))))))))))..... ( -26.90) >consensus UAAAAAUUCUGAAUGCAACCUG___CAUUGCAUCUAAACCUGCGACGUUUUGUUUCUAAAUAUUUCAAGUAAAUGUUUAGGAAACUGCAUUUAUCUGAAGAAAUC .........((((((((..........(((((........))))).......(((((((((((((.....)))))))))))))..))))))))............ (-17.85 = -17.97 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:03 2006