Locus 3148

Sequence ID 3L_DroMel_CAF1
Location 9,155,425 – 9,155,518
Length 93
Max. P 0.996076
window4910

overview

Window 0

Location 9,155,425 – 9,155,518
Length 93
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 91.46
Mean single sequence MFE -16.60
Consensus MFE -16.40
Energy contribution -16.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.10
Structure conservation index 0.99
SVM decision value 2.65
SVM RNA-class probability 0.996076
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9155425 93 + 23771897
CUAACACCCACCAAUACACUCCCA-UACUAACGCACACAUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU
........................-.............................(((((.(((((((((......))).)))))).)))))... ( -16.40)
>DroSim_CAF1 10649 93 + 1
CUUACACCCACCAAUACACUCACU-UACUAACACACACAUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU
........................-.............................(((((.(((((((((......))).)))))).)))))... ( -16.40)
>DroEre_CAF1 22779 91 + 1
CUUACACCCACCAAUCCACUCACUA---ACACACACACGUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU
.........................---........((((.........)))).(((((.(((((((((......))).)))))).)))))... ( -17.00)
>consensus
CUUACACCCACCAAUACACUCACU_UACUAACACACACAUAUAUACCACACGUUGCAGCAGCAGAAGGAACAGACUCCUUUUUGCCGUUGCCUU
......................................................(((((.(((((((((......))).)))))).)))))... (-16.40 = -16.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:44 2006