Locus 3146

Sequence ID 3L_DroMel_CAF1
Location 9,150,621 – 9,150,718
Length 97
Max. P 0.651827
window4907

overview

Window 7

Location 9,150,621 – 9,150,718
Length 97
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.57
Mean single sequence MFE -26.05
Consensus MFE -15.99
Energy contribution -17.93
Covariance contribution 1.95
Combinations/Pair 1.10
Mean z-score -2.31
Structure conservation index 0.61
SVM decision value 0.25
SVM RNA-class probability 0.651827
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9150621 97 - 23771897
----CGAUUGUUUUUU-GUUUUGUGGCGCCCAACGUGGGGCUCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUU----
----.((.(((.((((-((.((((((.((((......)))))))))).....(((((...((((((.....)))))).))))))))))).))).))......---- ( -25.60)
>DroPse_CAF1 6083 101 - 1
UUUGUGUGUGUAUUUG-AGGUGUUUGCGACCCCCACAGGAGCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGCUCAAAACU----
((((.((((((.((((-.(((.((((.(.....).)))).))).........(((((...((((((.....)))))).))))).)))))))))).))))...---- ( -21.90)
>DroSec_CAF1 5810 97 - 1
----CGAUUGUUUUUU-GUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUCCAAAUCAUUUUACUGCAAAAUGCGUUCGAAUUU----
----(((.(((.((((-((.((((((.((((......)))))))))).....(((((...((((((.....)))))).))))))))))).))).))).....---- ( -30.10)
>DroEre_CAF1 17882 102 - 1
----CGAGUGUUUUUUCGUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUUGUUG
----.((((((.((((((..((((((.((((......))))))))))..)..(((((...((((((.....)))))).)))))).)))).)))))).......... ( -27.20)
>DroYak_CAF1 19070 101 - 1
----CGAGUGUUUUUU-GUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUUCUUC
----.((((((.((((-((.((((((.((((......)))))))))).....(((((...((((((.....)))))).))))))))))).)))))).......... ( -29.60)
>DroPer_CAF1 6075 101 - 1
UUUGUGUGUGUAUUUG-AGGUGUUUGCGACCCCCACAGGAGCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGCUCAAAACU----
((((.((((((.((((-.(((.((((.(.....).)))).))).........(((((...((((((.....)))))).))))).)))))))))).))))...---- ( -21.90)
>consensus
____CGAGUGUUUUUU_GUUUUGUGGCGCCCAACGUGGGGCCCAUAAUUCAUGGUAAUUUAUGAUUAUUCAAAUCAUUUUGCUGCAAAAUGCGUUCAAAUUU____
.....((((((.(((.....((((((.((((......)))))))))).....(((((...((((((.....)))))).)))))...))).)))))).......... (-15.99 = -17.93 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:41 2006