Locus 3145

Sequence ID	3L_DroMel_CAF1
Location	9,148,422 – 9,148,517
Length	95
Max. P	0.512043

overview

Window 6

Location	9,148,422 – 9,148,517
Length	95
Sequences	4
Columns	116
Reading direction	forward
Mean pairwise identity	78.52
Mean single sequence MFE	-21.68
Consensus MFE	-14.35
Energy contribution	-15.35
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-1.58
Structure conservation index	0.66
SVM decision value	-0.04
SVM RNA-class probability	0.512043
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9148422 95 + 23771897
UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCACUGGUCACUUAGCGCUCAAGCUGCUUUUAUCUGUUCAAAUUUGCGAAUGAUAUAA---------------------GGUUGAAUC
........(((((((((((((.((....)).)))))))..))))))((((.((.....((((.((((........))))))))..)---------------------).))))... ( -22.50)
>DroSec_CAF1 3512 95 + 1
UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCUCUAGUCACUUAGCGCUCAAGCUGCUUUUAACUGUUCAAAUUUUCGAAUGAUAUAA---------------------GGUUGAACC
.(((((((((((((((((.(((((....))))).))))..((((......))))....)))).((((........)))).))))))---------------------)))...... ( -17.90)
>DroSim_CAF1 3527 116 + 1
UAUUUUAUGUGUUACGAUCAGAGGUAUUUCUCUAGUCACUUAGCGCUCAAGCUGGUUUUAACUGUUCAAAUUUGCGAAUGAUAUAUUCGAUAUAUAUAUGAUAUUAACUUUUAGCU
........((((((.(((.(((((....))))).)))...))))))...((((((..((((....(((.((...((((((...))))))......)).)))..))))...)))))) ( -19.80)
>DroEre_CAF1 15467 94 + 1
UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCUCUGGUCACUUAGCGCUCA-AGCCGUUUUAUCUGCUCAAAUUUGCAAAUGUUAUGA---------------------GUUUUAACA
........((((((((((((((((....))))))))))..))))))..(-((((((..(((.(((........))).)))..))).---------------------))))..... ( -26.50)
>consensus
UAUUUUAUGUGUUAUGAUCAGAGGUAUUUCUCUAGUCACUUAGCGCUCAAGCUGCUUUUAACUGUUCAAAUUUGCGAAUGAUAUAA_____________________GGUUGAACC
........((((((((((((((((....))))))))))..))))))...................................................................... (-14.35 = -15.35 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:40 2006