Locus 3141

Sequence ID 3L_DroMel_CAF1
Location 9,146,044 – 9,146,149
Length 105
Max. P 0.604289
window4900

overview

Window 0

Location 9,146,044 – 9,146,149
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 92.25
Mean single sequence MFE -22.84
Consensus MFE -20.96
Energy contribution -20.74
Covariance contribution -0.22
Combinations/Pair 1.15
Mean z-score -1.09
Structure conservation index 0.92
SVM decision value 0.14
SVM RNA-class probability 0.604289
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9146044 105 - 23771897
GAGAGAAUGUGGGCCACGGCACGCCCAGACUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCGCAUCAAAUCAGCAAAUCAGCCACA
((....((((((((((.((....))......(((((......))))))))))...((((((.....)))))).......)))))....)).((......)).... ( -18.90)
>DroSec_CAF1 1125 105 - 1
GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCGCAUCAAAUCAGCAAAUCAGCCACA
(((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). ( -23.21)
>DroSim_CAF1 1132 105 - 1
GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCGCAUCAAAUCAGCAAAUCAGCCACA
(((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). ( -23.21)
>DroEre_CAF1 13021 105 - 1
GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCACAUCAAAUCAGCAAAUCAGCCGCA
(((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). ( -22.81)
>DroYak_CAF1 14156 105 - 1
GAGAGAGUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGCCCAACUUUUGUGAGCUGCAAAAUUAAAAUCACAUCAAAUCAGCAAAUCAGCCACA
..((((((.(((((........)))))(((.(((((......))))).)))..))))))(((.((((..............................))))))). ( -23.71)
>DroAna_CAF1 1226 96 - 1
AAGAGAGUAUGGGUCGUGGCACGCCCAGGCUUGAUUACAAA-AAUUAUAGCCGACUUUUGUGGGCUGCAAAAUUAAAAUCAUAUCAAA--------UCAGCCACA
..((((((.((((.((.....))))))(((((((((.....-))))).)))).))))))((((.(((......((......)).....--------.))))))). ( -25.20)
>consensus
GAGAGAAUGUGGGCCACGGCACGCCCAGGCUUGAUUACAAAAAAUUAUGGCCAACUUUUGUGAGCUGCAAAAUUAAAAUCACAUCAAAUCAGCAAAUCAGCCACA
(((((....(((((........)))))(((((((((......))))).))))..)))))(((.((((..............................))))))). (-20.96 = -20.74 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:35 2006