Locus 3137

Sequence ID 3L_DroMel_CAF1
Location 9,132,628 – 9,132,730
Length 102
Max. P 0.659739
window4896

overview

Window 6

Location 9,132,628 – 9,132,730
Length 102
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.42
Mean single sequence MFE -23.40
Consensus MFE -21.05
Energy contribution -20.17
Covariance contribution -0.88
Combinations/Pair 1.12
Mean z-score -0.36
Structure conservation index 0.90
SVM decision value 0.27
SVM RNA-class probability 0.659739
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9132628 102 + 23771897
AUGAUA-AAGAUUGUUGAGCUUUCAGUAGGCACGCUCU---GUUCGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAG--------------GGUUGCUUAAGACUAAAAAACUU
......-.....(.((((((..((.(((((..((....---...)).))))).((((((((..((....))..))))))))..--------------))..)))))).)........... ( -21.80)
>DroPse_CAF1 1183 119 + 1
-GAAUAAAAGUUAGAUGAGCAUUUAGUAGGCACACUCCCUGGAUUGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAAUUAUGAUUGUAUUAGAUUGCUUAAAGCUAUGGUACUU
-.......((((...(((((((((((((((..((.((....)).)).))))).((((((((..((....))..))))))))..............)))).)))))).))))......... ( -25.00)
>DroSec_CAF1 704 101 + 1
-UGAUA-AAGAUUGAUGAGCUUUCAGUAGGCACGCUCU---GUUCGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAG--------------GGUUGCUUAAGACUAGAAAACUU
-.....-.........(((.((((((((((((.(((((---((.......)).((((((((..((....))..))))))))))--------------))))))))...))).)))).))) ( -23.40)
>consensus
_UGAUA_AAGAUUGAUGAGCUUUCAGUAGGCACGCUCU___GUUCGACUUACAGCUACUGUUUGUUCUUAUUGGCAGUAGUAG______________GGUUGCUUAAGACUAAAAAACUU
...............(((((..((.(((((..((..(....)..)).))))).((((((((..((....))..))))))))................))..))))).............. (-21.05 = -20.17 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006