Locus 3131

Sequence ID 3L_DroMel_CAF1
Location 9,127,747 – 9,127,842
Length 95
Max. P 0.953736
window4886

overview

Window 6

Location 9,127,747 – 9,127,842
Length 95
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 89.10
Mean single sequence MFE -26.02
Consensus MFE -23.41
Energy contribution -23.55
Covariance contribution 0.14
Combinations/Pair 1.16
Mean z-score -1.96
Structure conservation index 0.90
SVM decision value 1.44
SVM RNA-class probability 0.953736
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9127747 95 - 23771897
AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU
.........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -26.70)
>DroSec_CAF1 2826 95 - 1
AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCAAGACGAACAAAU
.........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((.(.....).)).)))))).... ( -23.80)
>DroSim_CAF1 2820 95 - 1
AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU
.........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -26.70)
>DroEre_CAF1 2864 94 - 1
-AGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU
-........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -26.70)
>DroYak_CAF1 2891 95 - 1
AAGCCUCUCCAUGUGUACGAGCUCGUACACAUGCCCA-----UCUAUUU-------UAAUAGCCGAC--UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU
.........((((((((((....))))))))))....-----.......-------...(((((...--...))))).((((((.((((......)))))))))).... ( -28.60)
>DroAna_CAF1 3228 107 - 1
UAGCCUCUCCAUAUAUACAAUC-CGUAUAUAUGCCAGUACUAUAUACUUACUUAUAUAGAAGCCGACUCUCAGGUUGAGUUUGUGUUCAAGCACCC-AGACGAGCAAAU
..((.((..(((((((((....-.)))))))))...((.(((((((......)))))))(((((((((....))))).))))((((....))))..-..)))))).... ( -23.60)
>consensus
AAGCCUCUCCAUGUGUACGAGCUCGUACAUAUGCCCA_____UCUAUUU_______UAAUAGCCGAC__UCAGGUUGAGUUUGUGUUCGAGCACCCGAGACGAACAAAU
.........((((((((((....))))))))))..........................(((((........))))).((((((.((((......)))))))))).... (-23.41 = -23.55 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:21 2006