| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,979,273 – 8,979,374 |
| Length | 101 |
| Max. P | 0.568576 |
| Location | 8,979,273 – 8,979,374 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.45 |
| Mean single sequence MFE | -35.42 |
| Consensus MFE | -24.45 |
| Energy contribution | -24.12 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8979273 101 - 23771897 --CAGGGAGUGCUCCACUUACCGGGUAAACGUUGCAUAAUCUGCUGGCGGUAUAUCUCCUGGGCGAUCUGCUGCUGCAAUCGCAGAUCGGCGAUGUUGGGCAA --..(((((((...))))).))..((.((((((((...((((((((((((((.(((.(....).))).)))))))).....))))))..))))))))..)).. ( -35.20) >DroVir_CAF1 20338 98 - 1 CAU-----AUAUACUUCAUACCUGGCAGGCGUUGCAUAAUUUGCUGGCGAUAAAUCUCAUGGGCGAUCUGCUGCUGCAUGCGCAGAUCGGCAAUGUUCGGCAG ...-----.............(((.(..(((((((.......(((.(.((......)).).)))(((((((.((.....))))))))).)))))))..).))) ( -33.50) >DroPse_CAF1 33566 96 - 1 -------CUUGCUCCACUUACCAGGCAAACGUUGCAUAAUCUGGUGGCGAUAGAUCUCGUGAGCGAUCUGCUGCUGCAUGCGCAGAUCGGCGAUGUUUGGCAG -------................(.((((((((((...((((((..(((.((((((.(....).)))))).)))..).....)))))..)))))))))).).. ( -36.90) >DroSim_CAF1 19007 96 - 1 --CAG-----GCUCCACUUACCGGGUAAGCGUUGCAUAAUCUGCUGGCGGUAUAUCUCCUGGGCGAUCUGCUGCUGCAGGCGCAGAUCGGCGAUGUUGGGCAA --...-----((.(((((.....))).((((((((...((((((.(((((((.(((.(....).))).)))))))(....)))))))..)))))))))))).. ( -33.90) >DroYak_CAF1 19465 92 - 1 GC-----------CCACUUACCGGGUAAUCGUUGCAUAAUCUGCUGGCGGUAUAUCUCCUGGGCGAUCUGCUGCUGCAGACGCAGAUCGGCGAUGUUGGGCAA ((-----------(((....(((((..(((((((((.....))).))))))......))))).((((((((..(....)..)))))))).......))))).. ( -36.10) >DroPer_CAF1 19246 96 - 1 -------CUUGCUCCACUUACCAGGCAAACGUUGCAUAAUCUGGUGGCGAUAGAUCUCGUGAGCGAUCUGCUGCUGCAUGCGCAGAUCGGCGAUGUUUGGCAG -------................(.((((((((((...((((((..(((.((((((.(....).)))))).)))..).....)))))..)))))))))).).. ( -36.90) >consensus _________UGCUCCACUUACCGGGCAAACGUUGCAUAAUCUGCUGGCGAUAUAUCUCCUGGGCGAUCUGCUGCUGCAUGCGCAGAUCGGCGAUGUUGGGCAA .......................(.(.((((((((.......(((.(.((......)).).)))(((((((.((.....))))))))).)))))))).).).. (-24.45 = -24.12 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:31 2006