| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,936,665 – 8,936,785 |
| Length | 120 |
| Max. P | 0.734084 |
| Location | 8,936,665 – 8,936,785 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Mean single sequence MFE | -47.50 |
| Consensus MFE | -27.65 |
| Energy contribution | -27.82 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.734084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8936665 120 - 23771897 CCGGCGAGGCACCCUUUCAGAGAAUUUUGCUAAACGGCAUUGUGUGCGAUGCUCAUGGCCGGAAGAUGUCCAAGAGUAUCGGCAACAUCGUGGCCCCACAGCAGGUGGUUCAGGGCGCCA .......(((.((((....(((...((((((....(((((.(((((((((((((.(((((....)..).))).))))))).)).)))).)).)))....))))))...))))))).))). ( -43.60) >DroVir_CAF1 28908 120 - 1 CCGGCAAGGCGCCCUUCGAUCGCAUCCUGCUCAAUGGCAUCGUGUGCGAUGCACAGGGCCGAAAGAUGUCCAAGAGCCUGGGCAAUAUUGUGACGCCACAACAGGUCGUUCAGGGCGCCA .......((((((((.(((((((..((.((((..((((((((....)))))).))(((((....)..))))..))))..))))....(((((....)))))..)))))...)))))))). ( -54.90) >DroGri_CAF1 30421 120 - 1 CCGGUGAGGCGCCCUUUCAGCGCAUCCUGCUCAAUGGGAUUGUAUGCGAUGCCCAGGGACGCAAGAUGUCCAAGAGUCUCGGCAACAUUGUCUCACCACAGCAGGUAGUGCAGGGCGCCA .......((((((((....((((..((((((...(((((((((.(((((.((.(..(((((.....)))))..).)).)).))))))..))))))....))))))..)))))))))))). ( -51.30) >DroWil_CAF1 34511 120 - 1 CAGGCAAGGCACCCUUCAAUCAUGUGCUCCUCAACGGCAUCGUCUGUGAUGCCCAGGGACGGAAAAUGUCGAAGAGCCUGGGCAAUAUAGUCGCCCCUCAGCAGGUGGUCCAAGGUGCUA .......((((((.((..(((((.((((.......(((...(.(((((.((((((((((((.....))))......)))))))).))))).))))....)))).)))))..)))))))). ( -44.60) >DroMoj_CAF1 28519 120 - 1 CUGGGAAGGCUCCCUUUCAGCGCAUUCUGCUCAAUGGCAUCGUGUGCGAUGCUCAGGGUCGCAAGAUGUCCAAGAGCUUAGGCAACAUUGUCACGCCACAGCAAGUGGUGCAGGGCGCCA .......(((.((((......((.....((((...((((((...((((((.(...).)))))).))))))...))))....))..........((((((.....)))))).)))).))). ( -46.50) >DroAna_CAF1 29301 120 - 1 CGGGUCAGGCGCCUUUUGAGCGUGUUCUCCUCAAUGGCAUUGUGUGCGAUGCCCAAGGCAGGAAGAUGUCGAAGAGUUUGGGCAAUAUUGUGGCGCCUCAACAGGUGGUACAGGGUGCUA .......(((((((.....((.((..(((.((...(((((((....)))))))...((((......)))))).)))..)).)).....((((.(((((....))))).))))))))))). ( -44.10) >consensus CCGGCAAGGCGCCCUUUCAGCGCAUUCUGCUCAAUGGCAUCGUGUGCGAUGCCCAGGGCCGGAAGAUGUCCAAGAGCCUGGGCAACAUUGUCGCGCCACAGCAGGUGGUGCAGGGCGCCA .......((((((((..............(((...(((((((....)))))))..)))..(((...((((..........)))).........((((......)))).))))))))))). (-27.65 = -27.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:03 2006