Locus 3080

Sequence ID 3L_DroMel_CAF1
Location 8,927,364 – 8,927,477
Length 113
Max. P 0.763945
window4803

overview

Window 3

Location 8,927,364 – 8,927,477
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.64
Mean single sequence MFE -26.38
Consensus MFE -19.41
Energy contribution -20.30
Covariance contribution 0.89
Combinations/Pair 1.05
Mean z-score -2.16
Structure conservation index 0.74
SVM decision value 0.51
SVM RNA-class probability 0.763945
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8927364 113 - 23771897
UUA-------AACUGAAAAUAGAGAAAUCUCAAUAAAAAAACGAGUUAAUUUAAUAUAAGGGGCGGUGCCACGACCAGAAUUUUUGGUACUAUAAAAGAUAUGGGCUAGUGUCACCCAAU
...-------...........(((....)))............................(((..(((((((.((.......)).)))))))......(((((......))))).)))... ( -19.70)
>DroSec_CAF1 20322 118 - 1
GCGAAAAAGCAUAUUAAAUUAAAGAAAUCCCUAUACAAAAACUAGUUAAUUUAAUAUAAUGGGCGGUGCCACGCCCAGAAUUUUUGGUAUUAUAAAAGAUAUGGGCUGGUGUCACCUA--
((......))((((((((((((..(.................)..))))))))))))..((((.((..(((.(((((...((((((......))))))...))))))))..)).))))-- ( -31.93)
>DroSim_CAF1 20681 118 - 1
GCGAAAAAGCAUACGAAAUUAAAGAAAUCCCUAUACAAAAACUAGUUAAUUUAAUAUAAGGGGCGGUGCCACGCCCAGAAUUUUUGGUAUUAUAAAAGAUAUGGGCUGGUGUCACCGA--
((......)).................((((((((..(((.........)))..))).)))))(((((.((((((((...((((((......))))))...)))))..))).))))).-- ( -27.50)
>consensus
GCGAAAAAGCAUAUGAAAUUAAAGAAAUCCCUAUACAAAAACUAGUUAAUUUAAUAUAAGGGGCGGUGCCACGCCCAGAAUUUUUGGUAUUAUAAAAGAUAUGGGCUGGUGUCACCCA__
............................................................(((.((..(((.(((((...((((((......))))))...))))))))..)).)))... (-19.41 = -20.30 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:01 2006