| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,893,711 – 8,893,805 |
| Length | 94 |
| Max. P | 0.696507 |
| Location | 8,893,711 – 8,893,805 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 95.32 |
| Mean single sequence MFE | -16.52 |
| Consensus MFE | -15.14 |
| Energy contribution | -15.14 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8893711 94 + 23771897 CAUUAUGAGCUAAAUAAAUGUAAGUGUGUCAACCUCGCUCAAGCUCUGUAAUUCAAACAGACAGCCACAGAUAUAGAUACAUCUACAUCUACAG .................(((((..((((((......((....))(((((.......)))))..............))))))..)))))...... ( -17.30) >DroSec_CAF1 153591 94 + 1 CAUUAUGAGCUAAAUAAAUGUAAGUGUGUCAACCUCGCUCAAGCUCUGUAAUUCAAACAGACAGCCACAGAUAUAGAUACAUCUACAUCUACAG .................(((((..((((((......((....))(((((.......)))))..............))))))..)))))...... ( -17.30) >DroSim_CAF1 152136 94 + 1 CAUUAUGAGCUAAAUAAAUGUAAGUGUGUCAACCUCGUUCAAGCUCUGUAAUUCAAACAGACAGCCACAGAUAUAGAUACAUCUACAUCUACAG .................(((((..((((((....((......(((((((.......)))))..))....))....))))))..)))))...... ( -16.00) >DroEre_CAF1 158998 93 + 1 CAUUAUGGGCUAAAUAAAUGUAAGUGUGUCAACCUCGUUCAGGCUCUGUAAUUCAAACAGACAGCC-CAGAUACAGAUACAUCUACAUCUACAG .................(((((..((((((....((.....((((((((.......)))))..)))-..))....))))))..)))))...... ( -19.10) >DroYak_CAF1 156857 94 + 1 CAUUAUGAGCUAAAUAAAUGUAAGUGUGUCAACCUCGUUCAAGCUCUGUAAUUCAAGCAGACAGCCACAGAUACAGAUACUUCUACAGAUACAU .......................(((((((............(((((((.......)))))..)).........(((....)))...))))))) ( -12.90) >consensus CAUUAUGAGCUAAAUAAAUGUAAGUGUGUCAACCUCGUUCAAGCUCUGUAAUUCAAACAGACAGCCACAGAUAUAGAUACAUCUACAUCUACAG ..............((.(((((.(((((((......((....))(((((.......)))))..............))))))).))))).))... (-15.14 = -15.14 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:53 2006