Locus 3054

Sequence ID 3L_DroMel_CAF1
Location 8,804,060 – 8,804,158
Length 98
Max. P 0.999480
window4766

overview

Window 6

Location 8,804,060 – 8,804,158
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 98.37
Mean single sequence MFE -22.46
Consensus MFE -21.58
Energy contribution -21.82
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.48
Structure conservation index 0.96
SVM decision value 3.64
SVM RNA-class probability 0.999480
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8804060 98 + 23771897
UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC
((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... ( -22.86)
>DroSec_CAF1 64169 98 + 1
UCCGUACAGUACAAAUCCGUAUCUCCAUCUAUAUCUCUUUCUGAUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC
((((.((((((((.(..((((.(((((.....(((.......))).....)))))...........))))..).)))))))).)).)).......... ( -21.60)
>DroSim_CAF1 65175 98 + 1
UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC
((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... ( -22.86)
>DroEre_CAF1 67602 98 + 1
UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC
((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... ( -22.86)
>DroYak_CAF1 66879 98 + 1
UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCAUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC
((((.((((((((((..((((.(((((.......(.......).......)))))...........))))..)))))))))).)).)).......... ( -22.14)
>consensus
UCCGUACAGUACGUAUCCGUAUCUCCAUCUAUAUCUCUUUCUGUUUGCUCUGGAGUGUGUUACUUUUACGUUUAUGUGCUGUUUGUGAUGCUAAUCUC
((((.((((((((((..((((........((((.((((....(....)...)))))))).......))))..)))))))))).)).)).......... (-21.58 = -21.82 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:26 2006