Locus 3051

Sequence ID 3L_DroMel_CAF1
Location 8,786,908 – 8,787,019
Length 111
Max. P 0.829006
window4763

overview

Window 3

Location 8,786,908 – 8,787,019
Length 111
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -25.92
Consensus MFE -16.38
Energy contribution -17.72
Covariance contribution 1.34
Combinations/Pair 1.22
Mean z-score -2.18
Structure conservation index 0.63
SVM decision value 0.71
SVM RNA-class probability 0.829006
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8786908 111 + 23771897
CCCUCUAAUUUU---CAACCGCGAGAUAACUUUCUGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACUCGACAACGUCGUCAUCAUCA---UCAUCGCGUCAUAGUUAUC
............---....((((((((.....(((((((((((((((.........)).)))))).)))))))...(((......)))......)---)).)))))........... ( -27.40)
>DroSec_CAF1 47295 111 + 1
CCCCCUAAUUUU---CAACCGCGAGAUAACUUUCAGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACCCGACAACGUCGUCAUCAUCC---UCAUCGCGGCAUAGUUAUC
.....(((((..---...((((((((.........((((((((((((.........)).)))))).))))......(((......))).......---)).))))))...))))).. ( -24.60)
>DroSim_CAF1 48104 111 + 1
CCCCCUAAUUUU---CAGCCGCGCGAUAACUUUCUGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACCCGACAACGUCGUCAUCAUCC---UCAUCGCGUCAUAGUUAUC
............---.....(((((((.....(((((((((((((((.........)).)))))).)))))))...(((......))).......---..))))))).......... ( -28.20)
>DroEre_CAF1 50029 111 + 1
CCCCCUAAUUUC---CAGCCGCGAGAUAAGUUUCUGUUGUUCUUGCGACUCAUCAACGUCGAGAAUCAACAGACCCGACGACGUCGUCAUCAUCC---UCAUCGCGUCAUAGUUAUC
............---..(.(((((((...(..(((((((((((..((((........)))))))).)))))))..)((((....)))).......---)).))))).)......... ( -30.30)
>DroYak_CAF1 48847 111 + 1
UUCCCAAAUCUC---CAACCGCGAGAUAAGUUUCUGUUGUUCCAGCGACUCAUCAACGUCAAGAAUCAACAUAGCCGACGACGUCGUCAUCAUUC---UCAACGCGUCAUAGUUAUC
............---....((((.(((.((((.(((......))).)))).)))......................((((....)))).......---....))))........... ( -19.60)
>DroAna_CAF1 48732 107 + 1
CCCCCCAGCCUUGCCUUAUUGCCAAGUAGUUCUAUGUU-UUUUUGCGACUCAUCAACGUCAAGAGUCCAAAGACGAGGCGACGUCAUCAUCAUCGCACGAGUCGCG----AG-----
.........((((.(.....).))))............-...(((((((((.....((((...........))))..((((.(.......).))))..))))))))----).----- ( -25.40)
>consensus
CCCCCUAAUUUU___CAACCGCGAGAUAACUUUCUGUUGUUCUUGCGACUCAUCAACGUCAAGAAUCAACAGACCCGACAACGUCGUCAUCAUCC___UCAUCGCGUCAUAGUUAUC
...................(((((........(((((((((((((((.........)).)))))).)))))))...(((......))).............)))))........... (-16.38 = -17.72 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:23 2006