Locus 3040

Sequence ID 3L_DroMel_CAF1
Location 8,727,498 – 8,727,596
Length 98
Max. P 0.517838
window4750

overview

Window 0

Location 8,727,498 – 8,727,596
Length 98
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.57
Mean single sequence MFE -30.47
Consensus MFE -21.64
Energy contribution -21.95
Covariance contribution 0.31
Combinations/Pair 1.12
Mean z-score -1.00
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.517838
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8727498 98 - 23771897
CGAGAGGAAAAUCAUGUGCGACUCGGCGCGUUGUCAAAGGAAAACUG--UCUGG-----CCGC-AGUGAAAAU----AUUUUUGUGCCGAGAUUUUCCCUCGCACCGAA--U
((((.((((((((..(.....)(((((((((.((((.((.....)).--..)))-----).))-.((....))----......))))))))))))))))))).......--. ( -31.00)
>DroPse_CAF1 11573 97 - 1
------------UGUGUGCGACUCGGCGCGUUGUCAAAGGAAAACUG--UCUGGCCCGGCCGC-UGGGAAAAUAUAUAUUUUCUUGCCGAGAUUUUCCCUCGCACUGAACAC
------------...(((((((((((((((((.((....)).)))..--...(((...)))))-.((((((((....))))))))))))))........))))))....... ( -29.40)
>DroEre_CAF1 10280 98 - 1
CGAGAGGAAAUUCAUGUGCGACUCGGCGCGUUGUCAAAGGAAAACUG--UCUGG-----CCGC-UGUGAAAAU----AUUUUUGUGCCGAGAUUUUCCCUCGCACCGAA--U
((((.(((((.((......))((((((((((.((((.((.....)).--..)))-----).))-(((....))----).....))))))))..))))))))).......--. ( -29.70)
>DroYak_CAF1 8506 98 - 1
CGAGAGGAAAAUCGUGUGCGACUCGGCGCGUUGUCAAAGGAAAACUG--UCUGG-----CCGC-UGUGAAAAU----AUUUUUGUGCCGAGAUUUUCCCUCGCACCGAA--U
((((.(((((((((....)))((((((((((.((((.((.....)).--..)))-----).))-(((....))----).....)))))))).)))))))))).......--. ( -33.70)
>DroAna_CAF1 8445 99 - 1
GGACUCGA--GGCGUGUGCGACUCGGCGCGUUGUCAAAGGAAAACUGUGUCUGC-----CAGCUACUGAAAAU----ACUUUCGUGCUGAGAUUUUCCUCGGCGCCGGA--U
((..((((--((((....)).((((((((((((.((.((.....)).....)).-----))))....((((..----..)))))))))))).....))))))..))...--. ( -29.60)
>DroPer_CAF1 11620 97 - 1
------------UGUGUGCGACUCGGCGCGUUGUCAAAGGAAAACUG--UCUGGCCCGGCCGC-UGGGAAAAUAUAUAUUUUCUUGCCGAGAUUUUCCCUCGCACUGAACAC
------------...(((((((((((((((((.((....)).)))..--...(((...)))))-.((((((((....))))))))))))))........))))))....... ( -29.40)
>consensus
CGAGAGGA___UCGUGUGCGACUCGGCGCGUUGUCAAAGGAAAACUG__UCUGG_____CCGC_UGUGAAAAU____AUUUUCGUGCCGAGAUUUUCCCUCGCACCGAA__U
...............(((((((((((((((((.((....)).)))......................((((((....))))))))))))))........))))))....... (-21.64 = -21.95 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:10 2006