Locus 3037

Sequence ID 3L_DroMel_CAF1
Location 8,714,063 – 8,714,182
Length 119
Max. P 0.594636
window4747

overview

Window 7

Location 8,714,063 – 8,714,182
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.78
Mean single sequence MFE -49.92
Consensus MFE -39.24
Energy contribution -39.27
Covariance contribution 0.03
Combinations/Pair 1.15
Mean z-score -2.44
Structure conservation index 0.79
SVM decision value 0.12
SVM RNA-class probability 0.594636
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8714063 119 + 23771897
GCGAGCGACGACGGUCCUCGUCCUCCAAGCGACGGCGGGCGUCCUCCAGCUGGGAAAUGACCUGGCUCUUGGAGAACGAGACCGUGUCCA-GCUGAACCUUCAGAUCUUGGACGUCCUUG
.((((.(((.((((((.((((.(((((((....((.((....)).))(((..((......))..)))))))))).))))))))))(((((-.((((....))))....)))))))))))) ( -55.50)
>DroVir_CAF1 44241 119 + 1
UUGAGCGACGACGGUCUUCGUCUUCCAGGCGGCGGCGUGCAUCCUCCAACUGGGAGAUGACUUGGCUCUUGGAAAACGAGACUGUGUCCA-AUUGAACUUUGAGAUCUUGGACGUCCUUG
..(((.(((.(((((((.(((.(((((((.(((.(.((.((((..((....))..)))))).).)))))))))).))))))))))(((((-(..((.(.....).)))))))))))))). ( -48.40)
>DroGri_CAF1 40447 119 + 1
UUGAGCGACGACGGUCUUCGUCUUCCAGGCGGCGGCGUGCAUCCUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGUGACUGUGUCCA-AUUGAACUUUGAGAUCUUGGACGUCCUUG
..(((.(((.((((((..(((.(((((((.(((.(.((.((((..((....))..)))))).).)))))))))).))).))))))(((((-(..((.(.....).)))))))))))))). ( -46.50)
>DroWil_CAF1 25692 119 + 1
GGGAGCGACGACGGUCUUCGUCUUCCAAACGGCGGCGUGCAUCUUCCAGUUGGGAGAUCACUUGGCUCUUGGAAAACGAGACGGUGUCCA-GCUGGGUCUUGAGAUCUUGGACGUCCUUG
..(((.(((.((.((((.(((.((((((..(((.(.(((.(((((((....)))))))))).).))).)))))).))))))).))(((((-...(((((....)))))))))))))))). ( -51.00)
>DroMoj_CAF1 21808 119 + 1
UUGAGCGACGACGGUCUUCGUCUUCCAGGCGGCGGCGUGCAUCUUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGAGACUGUGUCCA-AUUGAACUUUGAGAUCUUGGACGUCCUUG
..(((.(((.(((((((.(((.(((((((.(((.(.((.((((((((....)))))))))).).)))))))))).))))))))))(((((-(..((.(.....).)))))))))))))). ( -51.80)
>DroPer_CAF1 20843 120 + 1
UGGAGCGACGACGGUCCUCGUCUUCCAAGCGACGGCGAGCAUCCUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGAGACAGUGUCGACGCUGCACUUUGAGAUCUUGGACGUCCUUG
((.((((.((((.(((.((((.(((((((....(.((((((((..((....))..)))).)))).).))))))).)))))))...)))).)))).))............((....))... ( -46.30)
>consensus
UUGAGCGACGACGGUCUUCGUCUUCCAAGCGGCGGCGUGCAUCCUCCAGCUGGGAGAUGACUUGGCUCUUGGAAAACGAGACUGUGUCCA_ACUGAACUUUGAGAUCUUGGACGUCCUUG
..(((.(((.((((((.((((.(((((((.(.(((....((((.(((....))).))))..))).).))))))).))))))))))(((((..((........))....))))))))))). (-39.24 = -39.27 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:07 2006