Locus 3036

Sequence ID 3L_DroMel_CAF1
Location 8,710,621 – 8,710,723
Length 102
Max. P 0.845694
window4746

overview

Window 6

Location 8,710,621 – 8,710,723
Length 102
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 83.37
Mean single sequence MFE -22.52
Consensus MFE -13.15
Energy contribution -13.11
Covariance contribution -0.04
Combinations/Pair 1.23
Mean z-score -2.52
Structure conservation index 0.58
SVM decision value 0.77
SVM RNA-class probability 0.845694
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8710621 102 - 23771897
AUAUU-UGUGUUACUGCAC--ACAUCGAAGAGGAGAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUGUUCACUACACGAA
...((-(((((....(((.--....(((((.((((.(.....(((((((((((((......)))))))))))))))))).))))).....))).....))))))) ( -23.00)
>DroSec_CAF1 16074 102 - 1
AUAUU-UGUGUUACUGCAC--ACAUCGAAGAGCGGAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUUUUCCAUAUACGAA
.....-(((((....))))--).......((((((((.....(((((((((((((......)))))))))))))......))))))))................. ( -21.60)
>DroSim_CAF1 16926 102 - 1
AUAUU-UGUGUUACUGCAC--ACAUCGAAGAAGGGAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUUUUCACUAUACGAA
.....-(((((....))))--)....(((((((.((((....(((((((((((((......)))))))))))))......)))).))).))))............ ( -20.10)
>DroEre_CAF1 15920 92 - 1
AUAUUUUGUGUUACUAGAC--ACAACGAAGCGG-GGUAAAACCUUUUAAAAAUCACAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUC----------AUACGAA
.....(((((((....)))--)))).((.((((-((((....(((((((((((((......)))))))))))))....))))))))))----------....... ( -24.40)
>DroYak_CAF1 16244 104 - 1
AUAUUUUGUGUUUCUAGAUGAAUAAUCGAGGAG-GGGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAACCCUCCAUUUUGCUUACUUUUCAUUACACCAA
.......((((.....(((((((((.(((((((-((.......((((((((((((......))))))))))))))))))...))).)))...))))))))))... ( -23.51)
>consensus
AUAUU_UGUGUUACUGCAC__ACAUCGAAGAGG_GAGAAAACCUUUUAAAAAUCAAAUAUAUGAUUUUUAGAGGCCUCUAUUUUGCUUACUUUUCACUAUACGAA
.......((((..............(((((...((((.....(((((((((((((......))))))))))))).)))).))))).............))))... (-13.15 = -13.11 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:06 2006