| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,653,513 – 8,653,628 |
| Length | 115 |
| Max. P | 0.920642 |
| Location | 8,653,513 – 8,653,628 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.52 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -19.76 |
| Energy contribution | -20.16 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.920642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8653513 115 - 23771897 UUAUUUCGUCACAACUGUUUCGAAUUACUGGCCUAUCGAACGGAUGUGUGAAAAUCAAGGCAUU----CCUAUAUAAUGUUUAUGAUGCACAUAUAUCUAUAUCCGUUACGGUCUGGCC ....((((..((....))..)))).....((((.((((((((((((((((...(((((((((((----.......))))))).)))).)))))........))))))).))))..)))) ( -32.80) >DroSec_CAF1 41429 119 - 1 UUAUUUCGUCACAACUUUUUCAAAUAACGGGCUUAUCGAACGGAUGUGUGAAAAUCAAGGCAUUCCUUCCUAUAUAAUAUUUAUGGCACACAUAUAUCUAUAUCCGUUACGGUCUGGCC .............................((((.((((((((((((((((......((((....)))).(((((.......))))))))))(((....)))))))))).))))..)))) ( -25.10) >DroSim_CAF1 41824 115 - 1 UUUUUUCGUCACAACUUUUUCAAAUUACUGGCUUAUCGAACGGAUGUGUGAAAAUCAAGGCAUU----CCUAUAUAUUAUAUAUGGCACACAUAUAUCUAUAUCCGUUACGGUCUGGCC .............................((((.((((((((((((((.((......(((....----)))........((((((.....)))))))))))))))))).))))..)))) ( -27.20) >DroEre_CAF1 42899 108 - 1 ------CGCCAGAACUU-UUCGAAUCUCUGGCUUAUCGAACGGAUGUGUGAAAAUCAAAGCAGU----CCCAUAUAAUAUUUAUGGCACACAUAUAUCUUUAUCCGUUUCGGUCUGGCC ------.((((((....-........))))))..(((((((((((((((..........)))((----.(((((.......))))).))...........)))))).))))))...... ( -26.70) >DroYak_CAF1 42709 109 - 1 -----UCGUCACAGCUG-CUAGAAUUCCUGGCUUAUCAAACGGAUGUGUGAAAAUCAAAGCAUU----CCCAUAUAAUAUUUAUGGCACACAUAUAUCUAUAUCCGUUACGCUCUGGCC -----..((((.(((.(-((((.....)))))......((((((((((((.....)).......----.(((((.......)))))............))))))))))..))).)))). ( -28.20) >consensus UU_UUUCGUCACAACUUUUUCGAAUUACUGGCUUAUCGAACGGAUGUGUGAAAAUCAAGGCAUU____CCUAUAUAAUAUUUAUGGCACACAUAUAUCUAUAUCCGUUACGGUCUGGCC .............................((((.((((((((((((((((.....))............(((((.......)))))............)))))))))).))))..)))) (-19.76 = -20.16 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:17 2006