| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,620,215 – 8,620,316 |
| Length | 101 |
| Max. P | 0.642229 |
| Location | 8,620,215 – 8,620,316 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.83 |
| Mean single sequence MFE | -44.42 |
| Consensus MFE | -28.82 |
| Energy contribution | -30.85 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8620215 101 + 23771897 GAUAGUUAAUCAGCUGAAAGUGUGGCGUCUGCUGCUGAAAGUGAAUCGCCGGCGGAGGAGCCGGACUAUAGCCGCCCACAAUGGGCGUGGCAGCGGCACCA ..(((((....)))))......(((.(.((((((((....((......(((((......)))))......))(((((.....))))).))))))))).))) ( -40.00) >DroSec_CAF1 8598 101 + 1 GAUAGUUGAUCAGCUGAAAGUGCGGCGUCUGCUGCUGGAAGUGAAUCGCCGGCGGAGGAGCCGGACUAUAGCCGCCCACAAUGGGAGUUGCAGCUGCAGCA ....((((..((((((..(((.((((..((.(((((((..........)))))))))..)))).))).((((..(((.....))).)))))))))))))). ( -43.80) >DroSim_CAF1 5691 101 + 1 GAUAGUUGAUCAGCUGAAAGUGCGGCGUCUGCUGCUGGAAGUGAAUCGCCGGCGGAGGAGCCGGACUAUAUCCGCCCACAAUGGGCGUGGCAGCGGCAGCA ....((((....((((..(((.((((..((.(((((((..........)))))))))..)))).)))...(((((((.....))))).))))))..)))). ( -45.90) >DroEre_CAF1 10015 101 + 1 GGUAGUUGAUCAGCUGGAAGUGCGGUGUCUGCUGCUGGAAGUGAAUAGCCGGCGGAGGCGCCGGACUGUAGCCGCCCACAAUGGGCGUGGCAGCUGCAGCA .(((((((.(((((((..(((.((((((((.(((((((..........))))))))))))))).))).))))(((((.....))))))))))))))).... ( -53.50) >DroYak_CAF1 9077 101 + 1 GAUAGUUGAGCAGCUGGAAGUGCGGUGUCUGCUGCUGGAAGUGAAUCGCCGGCGCUGGAGCCGCACUAUAGCCGCCCACAAUGGGCGUGGCAGCUGAAGCA ....(((...((((((..((((((((..(.((.(((((..........))))))).)..))))))))....((((((.....))))).).)))))).))). ( -47.10) >DroMoj_CAF1 9298 89 + 1 GAUAGUUGAGCAACUGGAAGUUGGGCGUCUGCUGCUGGUAGUGUGCGGCAGGU---GGCGCC---ACAUAGCCGCCCACAAAGGGCGCUGCCAC------A ....((.((((....((....((((((((..((((((........))))))..---))))))---.))...))((((.....))))))).).))------. ( -36.20) >consensus GAUAGUUGAUCAGCUGAAAGUGCGGCGUCUGCUGCUGGAAGUGAAUCGCCGGCGGAGGAGCCGGACUAUAGCCGCCCACAAUGGGCGUGGCAGCUGCAGCA ............((((..(((.((((.(((.(((((((..........))))))).))))))).))).....(((((.....)))))...))))....... (-28.82 = -30.85 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:03 2006