| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,410,956 – 8,411,064 |
| Length | 108 |
| Max. P | 0.541706 |
| Location | 8,410,956 – 8,411,064 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.54 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -18.76 |
| Energy contribution | -18.68 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8410956 108 - 23771897 AUACCAAAGACGAUGUGGAAGGUAAUGUCAACUUGCGCGCUGGCGACAAGGUCAGCUUUCAAAUCGCAACGAACCAAAGGUA---AGCAAGCAUUGAU----UU-UAAACCAU-UUA-- ..............((((....(((.((((((((((..((((((......))))))................(((...))).---.)))))..)))))----.)-))..))))-...-- ( -23.40) >DroVir_CAF1 2396 109 - 1 AUACCAAAGACGAUGUCGAGGGCAAUGUCAAUUUGCGUGCUGGCGACAAGGUCAGCUUUCAGAUCGCUACGAACCAAAGGUGCGAG--A-GAAACUAUACCCUA-UAAUCUAU------ ........(((..(((((..((((.(((......)))))))..)))))..)))((.((((...((((..(........)..)))).--.-))))))........-........------ ( -25.00) >DroPse_CAF1 2307 95 - 1 AUACCAAAGACGAUGUCGAGGGCAAUGUCAACUUGCGUGCUGGCGACAAGGUCAGCUUUCAAAUUGCAACGAACCAAAGGUG---A----GAAAAGCA----CA-CG------------ .((((...(((..(((((..((((.(((......)))))))..)))))..))).((.........))...........))))---.----........----..-..------------ ( -22.70) >DroGri_CAF1 2576 106 - 1 AUACCAAAGACGAUGUUGAAGGCAAUGUGAAUUUACGUGCUGGCGACAAGGUCAGCUUUCAAAUUGCAACGAACCAAAGGUA---AAUA-AAUAUAAUC---UACUCAGCACU------ .............((((((..(((((.((((.......((((((......)))))).)))).))))).....(((...))).---....-.........---...))))))..------ ( -22.20) >DroMoj_CAF1 2307 102 - 1 AUACCAAAGACGAUGUUGAGGGCAAUGUCAAUUUGCGUGCUGGCGAUAAAGUCAGCUUUCAAAUCGCUACGAACCAAAGGUU------A-AAUAUUAUA---UA-UCAUCAAU------ .......((.((((.((((((((((.......))))..((((((......))))))))))))))))))...((((...))))------.-.........---..-........------ ( -21.70) >DroAna_CAF1 2759 107 - 1 AUACCAAAGACGAUGUCGAGGGCAAUGUGAACUUGCGGGCUGGCGACAAGGUCAGCUUUCAAAUUGCAACGAACCAAAGGUA---A----AUAAAAAG----CU-AAAUGUUUCUCUUU .((((...(((...)))..((....((..(..(((..(((((((......)))))))..))).)..)).....))...))))---.----.....(((----(.-....))))...... ( -23.60) >consensus AUACCAAAGACGAUGUCGAGGGCAAUGUCAACUUGCGUGCUGGCGACAAGGUCAGCUUUCAAAUCGCAACGAACCAAAGGUA___A__A_AAAAUAAU____UA_UAAUCAAU______ .((((...(((..(((((..((((.(((......)))))))..)))))..))).((.........))...........))))..................................... (-18.76 = -18.68 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:49 2006