Locus 2914

Sequence ID 3L_DroMel_CAF1
Location 8,303,657 – 8,303,752
Length 95
Max. P 0.919360
window4550

overview

Window 0

Location 8,303,657 – 8,303,752
Length 95
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 73.66
Mean single sequence MFE -38.07
Consensus MFE -25.19
Energy contribution -24.58
Covariance contribution -0.61
Combinations/Pair 1.36
Mean z-score -1.53
Structure conservation index 0.66
SVM decision value 1.13
SVM RNA-class probability 0.919360
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8303657 95 - 23771897
-----CCUUAGU------------UGGUUCCUUGCCCUGGAUAACAUCGAGCACCGCUGGUUUAAGCACAUCCUUGGUCACAUCGAUGUGGUUUAGGUCGAGGCCAUGUUGC
-----.......------------(((..(((((.(((((((.(((((((..((((..((...........)).))))....))))))).))))))).))))))))...... ( -30.80)
>DroPse_CAF1 11461 112 - 1
UCCCUCUUUGGUCUUGUUGUUUAGGGGGGCCUUGCCCUGGACCACGUCGAGUACGGCAGGCUUAAGGACAUCUUUGGCGACGUCGAUGUGGUUCAGGUCGAGACCAUGCUGC
........((((((((..((..(((....))).))(((((((((((((((((.((.((((............)))).)))).))))))))))))))).))))))))...... ( -44.30)
>DroEre_CAF1 9073 95 - 1
-----CUUUGGC------------UGGGUCCUUGCCCUGGAUCACAUCGAGCACCGCCGGCUUCAGCACAUCCUUGGUCACAUCGAUGUGGUUUAGGUCGAGACCAUGCUGU
-----....(((------------..((((.(((.(((((((((((((((..((((...((....)).......))))....))))))))))))))).)))))))..))).. ( -37.90)
>DroYak_CAF1 9156 95 - 1
-----CCUUGGC------------UGGGUCCUUGCCCUGGAUUACAUCGAGCACCGCCGGCUUUAGCACAUCCUUGGUCACAUCGAUGUGGUUUAGGUCGAGACCAUGCUGU
-----....(((------------..((((.(((.(((((((((((((((..((((...((....)).......))))....))))))))))))))).)))))))..))).. ( -35.80)
>DroMoj_CAF1 14007 112 - 1
ACUGCCAUUGGGCUGGCUUACUAGGGGUGCCUUGCCAUUGAUGAUGUCGAGCACAGCUGGCUGCAGCACAUCCUGUUCGACAUUGAUGUGAUUCAAGUCCAGGCCAUGCUGC
...(((((((.(((((((((.(((.(((.....))).))).))).))).))).))).)))).((((((...((((...(((.((((......)))))))))))...)))))) ( -36.70)
>DroPer_CAF1 10561 112 - 1
UCCCUCUUUGGUCUUGUUGUUUAGGGGGGCCUUGCCCUGGACCACGUCGAGAACGGCAGGCUUUAGGACAUCUUUGGCGACGUCGAUGUGGUUCAGGUCGAGACCAUGCUGC
........((((((((..((..(((....))).))(((((((((((((((...((....(((..((.....))..)))..))))))))))))))))).))))))))...... ( -42.90)
>consensus
_____CUUUGGU____________GGGGGCCUUGCCCUGGAUCACAUCGAGCACCGCAGGCUUAAGCACAUCCUUGGCCACAUCGAUGUGGUUCAGGUCGAGACCAUGCUGC
.........................((...((((.(((((((((((((((.....((.((...........))...))....))))))))))))))).)))).))....... (-25.19 = -24.58 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:54 2006