Locus 2910

Sequence ID 3L_DroMel_CAF1
Location 8,293,529 – 8,293,646
Length 117
Max. P 0.890950
window4544

overview

Window 4

Location 8,293,529 – 8,293,646
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.30
Mean single sequence MFE -31.55
Consensus MFE -22.46
Energy contribution -23.28
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -2.14
Structure conservation index 0.71
SVM decision value 0.96
SVM RNA-class probability 0.890950
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8293529 117 - 23771897
ACAAA--UGCGAGUGUA-UAUAGUAUAGCUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUUUAGUGGUGGCACGCAACAAAUGUGUCAAUGCA
.....--((((((((((-(...))))).)))....(((((..(((((((.((.((((((..((((.....))))..)))))).))..)))))))..))(((((.....)))))))).))) ( -28.90)
>DroSim_CAF1 15008 115 - 1
AUA----CGAGUGUGUA-UAUAGUAUAGCUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGGGGCUUUUAGUGGUGGCACGCAACAAAUGUGUCACUGCA
..(----(((((((((.-..((((.(((((.......)))))..)))).(........)))))).)))))..((((.....)))).....(..((((((((.......))))))))..). ( -35.00)
>DroEre_CAF1 15475 100 - 1
GCC-------------ACUA---UAUAACUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUU----AGUGACACGCAACAAAUGUGUCACUGCA
(((-------------((((---..............((((((..((((.....))))...))))))...........)))))))..(----(((((((((.......)))))))))).. ( -30.81)
>DroYak_CAF1 14991 116 - 1
GCACAUAUAUGUAUAUACUAUAGUAUAACUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUU----AGUGGCACGCAACAAAUGUGUCACUGCA
((((((((.(((.(((((....)))))...........(((((((((((.((.((((((..((((.....))))..)))))).)).))----))))))).)).))).))))))....)). ( -31.50)
>consensus
ACA____UG_GUGUGUA_UAUAGUAUAACUCUUUUUUGGCUGCCAUUAACGUAAUUAAGACGCAGCUCGUUUGCCCUUUAGUGGCUUU____AGUGGCACGCAACAAAUGUGUCACUGCA
.....................................((((((..((((.....))))...)))))).....((((....).))).....(((((((((((.......))))))))))). (-22.46 = -23.28 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:48 2006