Locus 29

Sequence ID 3L_DroMel_CAF1
Location 109,944 – 110,036
Length 92
Max. P 0.713193
window36

overview

Window 6

Location 109,944 – 110,036
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 95.49
Mean single sequence MFE -29.57
Consensus MFE -23.16
Energy contribution -23.64
Covariance contribution 0.48
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.78
SVM decision value 0.38
SVM RNA-class probability 0.713193
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 109944 92 + 23771897
AGCCAGGUGCAUUGAUUCGUUCUCGGAGAAUUGGCUUAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUUAAAUAGC---CACUCGA
.((((((((...(((..(((((.....))).))..)))....)))))))).((.((((((.......................))---)))).)) ( -26.10)
>DroSec_CAF1 45565 94 + 1
AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGC-CAUUUUCACCUGGCAUCUAGUGGCCCUGACACACGCCCCAUAAAAUAGCCGCCACUCGA
.((((((((...(((...((((.....))))...)-))....)))))))).((.((((((..........................)))))).)) ( -29.87)
>DroSim_CAF1 51262 91 + 1
AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGC-CAUUUUCACCUGGCAUCUAGUGGCCCUGACACACGCCCCAUAAAAUAGC---CACUCGA
.((((((((...(((...((((.....))))...)-))....)))))))).((.((((((.......................))---)))).)) ( -30.10)
>DroEre_CAF1 67837 92 + 1
AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGCCCAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUAAAAUAGC---CACUCGA
.((((((((...(((..(((((.....))).))..)))....)))))))).((.((((((.......................))---)))).)) ( -30.90)
>DroYak_CAF1 63269 92 + 1
AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGCCCAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUAAAAUAGC---CACUCGA
.((((((((...(((..(((((.....))).))..)))....)))))))).((.((((((.......................))---)))).)) ( -30.90)
>consensus
AGCCAGGUGCAUUGGAUCGUUCUCGGAGAAUUGGC_CAUUUUCACCUGGCAUCUGGUGGCCCUGACACACGCCCCAUAAAAUAGC___CACUCGA
.((((((((...(((.((((((.....))).))).)))....))))))))...(((.(((..........))))))................... (-23.16 = -23.64 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:16 2006