| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,271,050 – 8,271,164 |
| Length | 114 |
| Max. P | 0.912087 |
| Location | 8,271,050 – 8,271,164 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 91.93 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -23.52 |
| Energy contribution | -24.36 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8271050 114 - 23771897 GCUGCCCUGCUUUUCCAAUGACAACAAAGUGAAGCAAAACUAAUUUUAUUGAUACGCAAUAUCAGCUGUUGGCAGUCGAUAGUUGACCUAUCGAUAUAGGGGUAAAAUAAUACU ..(((((((((((.....((....))....)))))...........((((((((.((((((((.((((....)))).))).)))).).))))))))..)))))).......... ( -27.90) >DroSec_CAF1 6404 114 - 1 GCGGCCCUGCUUUUCUAAUGACAACAAAGUGAAGCAAAACUAAUUUUAUUGAUACGCAAUAUCAGCUGUUGGCAAUCGAUAGUUGACCUAUCGAUAGGAGGGUCAAAUAAUAAU ..(((((((((((.((...........)).)))))).......(((((((((((.(.....((((((((((.....))))))))))).)))))))))))))))).......... ( -32.20) >DroSim_CAF1 6372 114 - 1 GCGGCCCUGCUUUUCUAAUGACAACAAAGUGCAGCAAAACUAAUUUUAUUGAUACGCAAUAUCAGCUGUUGGCAAUCGAUUGUUGACCUAUCGAUAGGAGGGUCAAAUAAUAAU ..(((((((((...((...........))...)))).......(((((((((((.((.......)).((..((((....))))..)).)))))))))))))))).......... ( -26.40) >DroEre_CAF1 6507 113 - 1 GCG-CCCUGCUUUUCCAAUGACAACAAAGUGAAGCAAAACUAAUUUUAUUGAUACGCAAUAUCAGCUGAUGUCAAUCGAUAGUUGACUUAUCGAUAUGGAGGUCAAAUGGUUAU ..(-((.....((((((.(((((.((.(((........))).......((((((.....)))))).)).)))))((((((((.....)))))))).))))))......)))... ( -23.10) >DroYak_CAF1 6466 114 - 1 GCGGCCCUGCUUUUCCAAUGACAACAAAGUGAAGCAAAACCAAUUUAAUUGAUACGCAAUAUCAGCUGAUGGCAAUCGAUAGUUGACUUAUCGAUAUGGGGGUCAAAUAGUAAU ..(((((((((((.....((....))....))))))...(((.......(((((.....)))))((.....)).((((((((.....)))))))).)))))))).......... ( -26.10) >consensus GCGGCCCUGCUUUUCCAAUGACAACAAAGUGAAGCAAAACUAAUUUUAUUGAUACGCAAUAUCAGCUGUUGGCAAUCGAUAGUUGACCUAUCGAUAUGGGGGUCAAAUAAUAAU ..(((((((((((.....((....))....)))))...........((((((((.(.....((((((((((.....))))))))))).))))))))..)))))).......... (-23.52 = -24.36 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:24 2006