Locus 288

Sequence ID 3L_DroMel_CAF1
Location 825,246 – 825,366
Length 120
Max. P 0.982585
window430

overview

Window 0

Location 825,246 – 825,366
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.97
Mean single sequence MFE -51.89
Consensus MFE -47.91
Energy contribution -48.23
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -3.03
Structure conservation index 0.92
SVM decision value 1.92
SVM RNA-class probability 0.982585
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 825246 120 + 23771897
AGCAUGUCGAGGACUUCGGAUGACAUCCGGAAGCACCUGAAAGUGCGGCGCCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG
(((.(((...(((((((((((...)))).......((((...(..((((((((....((...((((.....)))).))...))))))))..).)))).......)))))))..)))))). ( -51.80)
>DroSec_CAF1 1722 120 + 1
AGCAUGUCGAGGACUUCGGAUGAUAUCCGGAAGCACCUGAAAGUGCGGCGUCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG
(((.(((...(((((((((((...)))).......((((...(..((((((((....((...((((.....)))).))...))))))))..).)))).......)))))))..)))))). ( -49.10)
>DroSim_CAF1 1724 120 + 1
AGCAUGUCGAGGACUUCGGAUGAUAUCCGGAAGCACCUGAAAGUGCGGCGCCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG
(((.(((...(((((((((((...)))).......((((...(..((((((((....((...((((.....)))).))...))))))))..).)))).......)))))))..)))))). ( -51.80)
>DroYak_CAF1 1701 120 + 1
AGCAUGUCGAGCACUUCGGAGGACAUCCGGAGGCAACUGAAGGUGCGGCGUCAGAAGCAGAGGGCCAUUUUGGCCACGAGAUGGCGCUGCGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG
(((.((((((((.(((((((.....)))))))....(((..((((((((((((.........((((.....))))......)))))))))))))))...........)))))).))))). ( -54.86)
>consensus
AGCAUGUCGAGGACUUCGGAUGACAUCCGGAAGCACCUGAAAGUGCGGCGCCAGAAGCAGAGGGCCAUUUUGGCCAUGAGAUGGCGCUGUGCCCAGGGAGGAUUGGAGUUCGAGCAGCUG
(((.(((...((((((((((.....))).......((((...(((((((((((....((...((((.....)))).))...))))))))))).)))).......)))))))..)))))). (-47.91 = -48.23 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:22 2006