| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,198,415 – 8,198,509 |
| Length | 94 |
| Max. P | 0.868897 |
| Location | 8,198,415 – 8,198,509 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.57 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -13.70 |
| Energy contribution | -15.20 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8198415 94 - 23771897 GUUGCACCCGUCUCAUCCGGAUCCG------CAACCCAUCUGCUCCU--CUAGGAGCA----------------ACCCUUUUCCCAGCGAUUAUUCAAGCGCAAAAUU-UGCGGUAAUC (((((..(((.......)))...((------(((......((((((.--...))))))----------------............(((..........))).....)-))))))))). ( -23.00) >DroSec_CAF1 26038 94 - 1 GCUGCACCCGCCUCAUCCGGAUCCG------CAGCCCAUCCGCUCCU--CCAGGAGCA----------------ACCCUCUUCCCAGCGAUUAUUCAAGCGCAAAAUU-UGCGGUAAUC (((((..(((.......)))....)------))))......(((((.--...))))).----------------(((.........((..........))(((.....-)))))).... ( -24.30) >DroSim_CAF1 23937 94 - 1 GCUGCACCCGCCUCAUCCGGAUCCG------CAGCCCAUCCGCUCCU--CCAGGAGCA----------------ACCCUUUUCCCAGCGAUUAUUCAAGCGCAAAAUU-UGCGGUAAUC (((((..(((.......)))....)------))))......(((((.--...))))).----------------(((.........((..........))(((.....-)))))).... ( -24.30) >DroEre_CAF1 29324 94 - 1 GCUGCACCCGUCUCAUCCGGAUCCC------AAGCCCAUCUGCUCCU--CCAGGAGCC----------------ACCCCUUGCCCAGCGAUUAUUCAAGCGCAAAAUU-UGCGGUAAUC ((((...(((.......)))....(------(((.......(((((.--...))))).----------------....))))..))))((((((.....((((.....-)))))))))) ( -22.50) >DroWil_CAF1 34216 108 - 1 CUAUUG----CCACGCAUGACACCA------CCACCCAACCACCCAUAUCAAAGACCACCAUCGAAUGCCUUGGAAC-CUACCCCAACAGUUAUUCAAGCGCAAAAUUUUGCAGUAAUC ..((((----(...((.........------......................((......))(((((.(((((...-.....)))..)).)))))..))((((....)))).))))). ( -12.40) >DroYak_CAF1 26833 100 - 1 GCUGCACCCGUCUCAUCCGGAGCCCAACUCCAAGCCCAUCAGCUCCU--CCAGGAGCA----------------ACCCUUUUCCCAGCGAUUAUUCAAGCGCAAAAUU-UGCGGUAAUC ((((..............((((.....))))..........(((((.--...))))).----------------..........))))((((((.....((((.....-)))))))))) ( -25.40) >consensus GCUGCACCCGCCUCAUCCGGAUCCG______CAGCCCAUCCGCUCCU__CCAGGAGCA________________ACCCUUUUCCCAGCGAUUAUUCAAGCGCAAAAUU_UGCGGUAAUC ((((...(((.......))).....................((((((....))))))...........................))))((((((.....((((......)))))))))) (-13.70 = -15.20 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:46 2006