| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,192,611 – 8,192,718 |
| Length | 107 |
| Max. P | 0.522086 |
| Location | 8,192,611 – 8,192,718 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.68 |
| Mean single sequence MFE | -38.77 |
| Consensus MFE | -26.33 |
| Energy contribution | -25.93 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8192611 107 - 23771897 ACCGCUCCGG------CUGUGGUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACACCGCCAACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACCGC------- .......(((------(((.((.((((.((((.......((((((............)))))).(((((.....)))))......)))).)))).))))))))..........------- ( -39.10) >DroPse_CAF1 21045 107 - 1 ACCGCUCCGG------CUGUGGUGGGAAGCGCCGCCUAUGUGGCACCUUAUGCUUCCAGCUUCACCGCCCACUCGGUUGCCCACAGCGCCGCCUUUCCUGCUGCGUACACUGC------- ...((.(((.------.((.(((((((((((((((....)))))......((....))))))).)))))))..)))..)).....((((.((.......)).)))).......------- ( -38.90) >DroGri_CAF1 24427 120 - 1 ACCGCACCAGCAGCCGCUGUUGUUGGCAGCGCCGCCUAUGUGGCGCCCUACGCGUCCAGCUAUACCGCUAACCAGGUCGCCCACAGCGCCGCCUUCCCCGCUGCCUACACUGCACCGAUU ...(((.((((....)))).(((.(((((((........(((((((.....(((.(((((......))).....)).))).....)))))))......))))))).))).)))....... ( -44.34) >DroWil_CAF1 21175 107 - 1 ACUGCUCCAG------CUGUCGUAGGUAGUGCCGCCUAUGUGGCUCCCUAUGCCUCCAGCUUCAACGCUCACCAGGUAGCCCACAGUGCUGCCUUCCCAGCUGCAUACACCGC------- ..(((...((------(((.((((((....(((((....)))))..))))))....))))).....(((....(((((((.......)))))))....))).)))........------- ( -34.20) >DroYak_CAF1 20932 101 - 1 ACCGCUCCGG------CUGUGGUGGGCAGUGCCGCCUACGUGGCUCCCUACGCCUCCAGCUACACCGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUA------------- .......(((------(((.(((((((.(((..((....(.(((.......))).)..))..))).))))))).((((((.......))))))....))))))....------------- ( -40.30) >DroPer_CAF1 21393 107 - 1 ACCGCUCCGG------CUGUGGUGGGAAGCGCCGCCUAUGUGGCACCUUAUGCUUCCAGCUUCACCGCCCACUCGGUUGCCCACAGCGCCGCCUUUCCUGCUGCCUACACUGC------- ...((.(((.------.((.(((((((((((((((....)))))......((....))))))).)))))))..)))..))...(((((..........)))))..........------- ( -35.80) >consensus ACCGCUCCGG______CUGUGGUGGGCAGCGCCGCCUAUGUGGCUCCCUACGCCUCCAGCUACACCGCCCACUCGGUGGCCCACAGCGCCGCCUUCCCAGCUGCCUACACUGC_______ .(((((.((((....)))).)))))((((((((((....))))).......((.....((......))......(((.((.....))))))).......)))))................ (-26.33 = -25.93 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:40 2006