Locus 2854

Sequence ID 3L_DroMel_CAF1
Location 8,157,551 – 8,157,671
Length 120
Max. P 0.542326
window4459

overview

Window 9

Location 8,157,551 – 8,157,671
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.50
Mean single sequence MFE -39.07
Consensus MFE -21.44
Energy contribution -22.28
Covariance contribution 0.84
Combinations/Pair 1.41
Mean z-score -1.93
Structure conservation index 0.55
SVM decision value 0.02
SVM RNA-class probability 0.542326
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8157551 120 - 23771897
AUACGAUUCUUAAUUCUCUAAACGAUGUGGUCUACUUGCUGCGUCAUUCGUCGGCCGUGUCGCAUCAGCAACAAUUGCUGCUUUUGCUGCCUUCGCUGCGGCAGGCGGAUGAUAUCCUGC
.......................((((..((......))..))))..(((((.(((.(((((((.(((((.....))))).....((.......)))))))))))).)))))........ ( -37.60)
>DroVir_CAF1 12762 120 - 1
ACACCAUACUCAAUUCGCUCAACGAUGUUGUCUACUUGCUGCGCCACUCGUCCGCGGUGUCCCAUCAGCAGCAGCUGCUGCUGUUGUUGCCCUCGCUGCGGCAGGCGGACGACAUACUGC
................((......((((((((..(((((((((((((.((....)))))......((((((((((....)))))))))).....)).))))))))..))))))))...)) ( -47.40)
>DroPse_CAF1 10767 120 - 1
ACACCAUACUAAAUUCACUGAACGAUGUGGUCUACCUGCUUCGCCACUCCUCCGCGGUGUCCCAUCAACAGCAGCUUCUGCUCAUCCUGCCCUCGCUGCGGCAAGCAGACGAUAUUUUGC
..((((((.................))))))....((((((.(((((.((.....)).))..........(((((....((.......))....))))))))))))))............ ( -28.93)
>DroGri_CAF1 11577 120 - 1
ACACCAUCCUUAAUUCCUUGAAUGAUGUCGUCUACCUGCUGCGCCACUCCUCCGCCGUCUCCCAUCAGCAGCAGUUGCUGUUGCUGUUGCCCUCGUUGCGCCAGGCGGACGAAAUACUGC
....((((.((((....))))..))))(((((..((((..((((.((..(......).....((.(((((((((...))))))))).)).....)).))))))))..)))))........ ( -34.80)
>DroMoj_CAF1 11937 120 - 1
ACACCAUCCUCAACUCGCUCAACGACGUGGUCUACCUGCUGCGCCACUCCUCGGCCGUCUCGCACCAGCAGCAGCUGCUCCUGCUGCUGCCGUCGCUGCGACAGGCGGAUGACAUACUGC
....(((((.(...((((....(((((((((......(.((.(((.......))))).)....))))((((((((.......)))))))))))))..))))...).)))))......... ( -42.70)
>DroAna_CAF1 44502 120 - 1
AUACGAUUCUCAAUUCAUUGAACGAUGUCGUCUAUCUCCUGAGGCAUUCGUCAGCGGUAUCGCAUCAGCAACAGCUACUUCUGUUGCUGCCGUCGCUGCGACAGGCGGACGACAUAUUGC
...((.(((..........)))))(((((((((....((((.(((....))).(((((..((...(((((((((......))))))))).))..)))))..)))).)))))))))..... ( -43.00)
>consensus
ACACCAUACUCAAUUCACUGAACGAUGUGGUCUACCUGCUGCGCCACUCCUCCGCCGUGUCCCAUCAGCAGCAGCUGCUGCUGUUGCUGCCCUCGCUGCGGCAGGCGGACGACAUACUGC
........................((((.((((.((((.(((((.........))..........((((((((((....))))))))))........))).)))).)))).))))..... (-21.44 = -22.28 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:25 2006