| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,045,725 – 8,045,845 |
| Length | 120 |
| Max. P | 0.665433 |
| Location | 8,045,725 – 8,045,845 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.89 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -26.53 |
| Energy contribution | -26.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8045725 120 + 23771897 AAACAAACCGAAAAUCAAAUAAUGAACUCACCACAGCUGGCGCCCACCACUGCGCAAUCUCACCACGCUGAGAGCGCUGACAAAACAGCGCCGCCUGGAAAUAAAUAUGCGCCUGGAAGA .......(((....(((.....))).............(((((...(((..(((...(((((......)))))((((((......))))))))).)))..((....)))))))))).... ( -28.70) >DroSec_CAF1 16829 120 + 1 AAACAAACCGAAAAUCAAAUAAUGAACUCACCACAGCUGGCGCCCACCACUGCGCAAUCUCACCACGCUGAGAGCGCUGACCAAACAACGCCGCCUGGAAAUAAAUAUGCGCCUGGAAGA .......(((....(((.....))).............(((((........((((..(((((......)))))))))...(((..(......)..)))..........)))))))).... ( -24.10) >DroSim_CAF1 16864 120 + 1 AAACAAACCGAAAAUCAAAUAAUGAACUCACCACAGCUGGCGCCCACCACUGCGCAAUCUCACCACGCUGAGAGCGCUGACCAAACAGCGCCGCCUGGAAAUAAAUAUGCGCCUGGAAGA .......(((....(((.....))).............(((((...(((..(((...(((((......)))))((((((......))))))))).)))..((....)))))))))).... ( -28.70) >consensus AAACAAACCGAAAAUCAAAUAAUGAACUCACCACAGCUGGCGCCCACCACUGCGCAAUCUCACCACGCUGAGAGCGCUGACCAAACAGCGCCGCCUGGAAAUAAAUAUGCGCCUGGAAGA .......(((....(((.....))).............(((((...(((..(((...(((((......)))))((((((......))))))))).)))..((....)))))))))).... (-26.53 = -26.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:41 2006