| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,042,137 – 8,042,243 |
| Length | 106 |
| Max. P | 0.961401 |
| Location | 8,042,137 – 8,042,243 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 86.38 |
| Mean single sequence MFE | -37.27 |
| Consensus MFE | -36.03 |
| Energy contribution | -36.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8042137 106 - 23771897 UU--GCA--GGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAUUCU-U-UUUGAAAUUA-----A ..--...--.(((((((..(((((((((.((..(((.(((....))))))..)).))))))....)))(((((.......))))))))))))..(((.-.-...)))....-----. ( -36.20) >DroGri_CAF1 12637 113 - 1 UC--GUAGCAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGACU-U-UUUGCAGUUUUUUUUU ..--......(((((((..(((((((((.((..(((.(((....))))))..)).))))))....)))(((((.......))))))))))))((((((-.-.....))))))..... ( -37.80) >DroSec_CAF1 13275 106 - 1 UC--GCA--GGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAUCCU-U-UUUGGAACCU-----A ..--...--.(((((((..(((((((((.((..(((.(((....))))))..)).))))))....)))(((((.......))))))))))))..(((.-.-...)))....-----. ( -38.60) >DroEre_CAF1 13134 107 - 1 UU--GCA--AGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAUU-AUUUUUUAGAAUUU-----U ..--...--.(((((((..(((((((((.((..(((.(((....))))))..)).))))))....)))(((((.......))))))))))))....-..............-----. ( -36.10) >DroYak_CAF1 13626 108 - 1 UU--ACA--AGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAACCUUUUUUUAGAAUUU-----C ..--...--.(((((((..(((((((((.((..(((.(((....))))))..)).))))))....)))(((((.......))))))))))))...................-----. ( -36.10) >DroMoj_CAF1 11948 112 - 1 GCCAACAACAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGAUU-A-UUUU---UGUUGAUUU .....((((.(((((((..(((((((((.((..(((.(((....))))))..)).))))))....)))(((((.......))))))))))))((((..-.-.)))---))))).... ( -38.80) >consensus UC__GCA__AGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAUACU_U_UUUGGAAUUU_____U ..........(((((((..(((((((((.((..(((.(((....))))))..)).))))))....)))(((((.......))))))))))))......................... (-36.03 = -36.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:33 2006