Locus 2812

Sequence ID 3L_DroMel_CAF1
Location 8,034,151 – 8,034,259
Length 108
Max. P 0.717131
window4392

overview

Window 2

Location 8,034,151 – 8,034,259
Length 108
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.32
Mean single sequence MFE -34.08
Consensus MFE -26.75
Energy contribution -28.92
Covariance contribution 2.17
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.78
SVM decision value 0.39
SVM RNA-class probability 0.717131
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 8034151 108 - 23771897
CUUACGGCUCUUGAGAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAGAUUUUU---------
(((((((((((((.....)))))..)))((((((.((..(((.(((....))))))..)).)))))-).))))).(((((.......))))).(((.....))).....--------- ( -37.10)
>DroVir_CAF1 5747 83 - 1
-------------------------GCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGAAUGUUU---------
-------------------------(((((((((.((..(((.(((....))))))..)).)))))-)....)))(((((.......)))))((((....)))).....--------- ( -28.40)
>DroPse_CAF1 4738 117 - 1
CUCGUUG-UUCCAACAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGAAUCUUUUUGUGAUUU
...((((-...)))).(((((((.((((....))))....((((((((.......))))))((((....))))))(((((.......))))))))))))..(((((.......))))) ( -37.40)
>DroSec_CAF1 5549 108 - 1
CUUGAAAUUCUUAAAAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAGAUUUUU---------
...((((.((((....(((((((..(((((((((.((..(((.(((....))))))..)).)))))-)....)))(((((.......)))))))))))).)))).))))--------- ( -37.20)
>DroEre_CAF1 5524 86 - 1
----------------------AUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU-CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAUACUUUU---------
----------------------...(((((((((.((..(((.(((....))))))..)).)))))-)....)))(((((.......))))).................--------- ( -27.00)
>DroPer_CAF1 4770 117 - 1
CUCGUUG-UUCCAACAGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACUUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAGAAUCUUUUUGUGAUUU
...((((-...)))).(((((((.((((....))))....((((((((.......))))))((((....))))))(((((.......))))))))))))..(((((.......))))) ( -37.40)
>consensus
CU_G__G_U___AA_AGUCAGGAUGGCCGAGUGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUACU_CUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAAAUUUUU_________
................(((((((.......(((..((((.((...)).)).))..))).((((((....))))))(((((.......))))))))))))................... (-26.75 = -28.92 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:19 2006