| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 8,010,912 – 8,011,017 |
| Length | 105 |
| Max. P | 0.639479 |
| Location | 8,010,912 – 8,011,017 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 84.68 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -17.75 |
| Energy contribution | -19.50 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 8010912 105 + 23771897 AGGAGGUCCGAACCCGAAAAGUCAUUGAAAAGUUAUUUUUCGGCUUAAGCUGCUCAAAGCAUUCGAAAGGAAUGUGCACUGGAGUUAGGAAUGAUCGACG-GGAAA .(..((((.....(((((((((.(((....))).)))))))))(((((.((.(.....((((((.....)))))).....).)))))))...))))..).-..... ( -27.50) >DroSim_CAF1 5249 100 + 1 A---GGUCCGAACCCAAAAAGUCAUUGAAAAGUUAUUUUUCGGCUUAAGCUGCUCAAAGCAUUCGAGGGGAAUGUGCACUG---UUGGGAAUGAUCGAAGGGGAAA .---........(((.....((((((..............((((....))))(((((.((((((.....))))))......---))))))))))).....)))... ( -22.50) >DroEre_CAF1 1896 97 + 1 A---GGUCCGAACCCGAAAAGUCAUUGAAAAGUUAUUUUUCGGCUUAAGCUGCU-AAGGCAUCCGGCA-GAAUGUGCA-UGGAGCUG--GAUAAUCGAAU-GGGAA .---.((((....(((((((((.(((....))).)))))))))....((((((.-...)))(((((((-.....))).-))))))))--)))........-..... ( -26.70) >DroYak_CAF1 33392 98 + 1 A---GGUCCGAACCCGAAAAGUCAUUGAAAAGUUAUUUUUCGGCUUAAGCUGCU-AAAGCAUCCGAAAGGAAUGUGCU-UGCAGCUG--GAUAUUCGAAU-GGGAA .---.((((....(((((((((.(((....))).)))))))))....((((((.-.((((((((....)))...))))-))))))))--)))........-..... ( -35.80) >consensus A___GGUCCGAACCCGAAAAGUCAUUGAAAAGUUAUUUUUCGGCUUAAGCUGCU_AAAGCAUCCGAAAGGAAUGUGCA_UGGAGCUG__AAUAAUCGAAG_GGAAA ......(((....(((((((((.(((....))).)))))))))....((((.(.....((((((....)).)))).....).))))...............))).. (-17.75 = -19.50 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:12 2006