| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,961,653 – 7,961,762 |
| Length | 109 |
| Max. P | 0.689349 |
| Location | 7,961,653 – 7,961,762 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.55 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -8.10 |
| Energy contribution | -9.50 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.689349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7961653 109 + 23771897 UUUCUAGCUAACCCUGGGC-UUCUCCCUUGAUGCGAUUUCUUUGAAUUUCCCC--UCUCUUGAUUGCUUUUUGCAGUUUCGCCCA------AAAAGGGCGC--UCAAUUGGUUUAUGAGU .(((.((((((....(((.-....)))((((.((...................--......((((((.....))))))..((((.------....))))))--))))))))))...))). ( -24.40) >DroSec_CAF1 4789 110 + 1 UUCCUAGCUAUCCCUGGGUUUUCUCCCUUGAUGCGAUUUCUUUGCAUUUCCCC--UCUCUUGAUUGCUUUUUGCAGUUUCGCCCA------AAAAGGGCGC--UCAAUUGGUUUAUGAGU ..(((((......)))))....(((....(((((((.....)))))))...((--......((((((.....)))))).(((((.------....))))).--......)).....))). ( -26.40) >DroSim_CAF1 4822 110 + 1 UUCCUAGCUAUCCCUGGGUUUUCUCCCUUGAUGCGAUUUCUUUGAAUUUCCCC--UCUCUUGAUUGCUUUUUGCAGUUUCGCCCA------AAAAGGGCGC--UCAAUUGGUUUAUGAGU (((..(((((.....(((......)))((((.((...................--......((((((.....))))))..((((.------....))))))--)))).)))))...))). ( -24.20) >DroWil_CAF1 6777 97 + 1 UUCAG----------------UUUGCCCAGAAUUCAGGUCCUUAAAUUUCCCA--G-----AAAAUAUUCCUGGAGUAUGAGUGAAUGAACAAAUGGGCAAAGAAAAUUGGUUUAUAAAU .....----------------((((((((...((((..((((((...((((..--(-----((....)))..))))..)))).)).))))....)))))))).................. ( -23.40) >DroYak_CAF1 5300 112 + 1 UUCAUAGCUAUCCUGAUUCUCUCUCCCUUGAUGCGAUUUCUUUGCAUUUCCCCCUCCUUUUGAUUGCUUUUUGCAGCUUCGUCCA------AAAAGGGCGC--UCAAUUGGUUUAUGAGU (((((((......................(((((((.....))))))).......((..((((((((.....))))...(((((.------....))))).--))))..)).))))))). ( -23.50) >consensus UUCCUAGCUAUCCCUGGGCUUUCUCCCUUGAUGCGAUUUCUUUGAAUUUCCCC__UCUCUUGAUUGCUUUUUGCAGUUUCGCCCA______AAAAGGGCGC__UCAAUUGGUUUAUGAGU ......................(((....(((((((.....)))))))..((.........((((((.....)))))).(((((...........))))).........)).....))). ( -8.10 = -9.50 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:55 2006