| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,885,437 – 7,885,539 |
| Length | 102 |
| Max. P | 0.620510 |
| Location | 7,885,437 – 7,885,539 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.35 |
| Mean single sequence MFE | -13.85 |
| Consensus MFE | -10.18 |
| Energy contribution | -10.23 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7885437 102 + 23771897 AACUC-GUGGAACAUACACAAAAACACACACCA---ACAGAACUCGAAACACAAUAGAACGAACGCACAAGGAGACAAAUAAUUCGUUUGUACUCGAUUCGUUUAC .....-(((.......)))..............---....................((((((((......)(((((((((.....)))))).)))..))))))).. ( -14.70) >DroSec_CAF1 38276 102 + 1 AACUC-GUGGAACAUACACAAAAACACACACCA---ACAGAACUCGAAACACAAUAAAACGAACGCACAAGGAGACAAAUAAUUCGUUUGUACUCGAUUCGUUUAC .....-(((.......)))..............---....................((((((((......)(((((((((.....)))))).)))..))))))).. ( -14.30) >DroSim_CAF1 38509 102 + 1 AACUC-GUGGAACAUACACAAAAACACACACCA---ACAGAACUCGAAACACAAUAAAACGAACGCACAAGGAGACAAAUAAUUCGUUUGUACUCGAUUCGUUUAC .....-(((.......)))..............---....................((((((((......)(((((((((.....)))))).)))..))))))).. ( -14.30) >DroEre_CAF1 41745 85 + 1 ---------------ACACAAAAA--CACACCA---ACAC-ACUUGAAACACAAUAAAACGAACGCACAAGGAGACAAAUAAUUCGUUUGUACUCGAUUCGUUUAC ---------------.........--.......---....-...............((((((((......)(((((((((.....)))))).)))..))))))).. ( -11.50) >DroYak_CAF1 31644 101 + 1 AGAUC-GUGGAACAUACACAAAAACACACACCA---ACAC-ACUCGAAACACAAUAAAACGAACGCACAAGGAGACAAAUAAUUCGUUUGUACUCGAUUCGUUUAC .....-(((.......)))..............---....-...............((((((((......)(((((((((.....)))))).)))..))))))).. ( -14.30) >DroAna_CAF1 40660 97 + 1 AAUUCCGUACAACAAAU---AAAA--CACAAUAAUCACAAAACACG---CAUACGAAAACAGACGCACU-GGAGACAAAUUUCUCGUUUGUACUCGGAUCGUUUAU ...((((....((((((---....--....................---..........(((.....))-)((((......))))))))))...))))........ ( -14.00) >consensus AACUC_GUGGAACAUACACAAAAACACACACCA___ACAGAACUCGAAACACAAUAAAACGAACGCACAAGGAGACAAAUAAUUCGUUUGUACUCGAUUCGUUUAC ........................................................((((((((......)(((((((((.....)))))).)))..))))))).. (-10.18 = -10.23 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:30 2006