Locus 278

Sequence ID 3L_DroMel_CAF1
Location 791,294 – 791,393
Length 99
Max. P 0.611943
window418

overview

Window 8

Location 791,294 – 791,393
Length 99
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.53
Mean single sequence MFE -23.03
Consensus MFE -18.58
Energy contribution -18.78
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.43
Structure conservation index 0.81
SVM decision value 0.16
SVM RNA-class probability 0.611943
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 791294 99 + 23771897
UUAGAAUGUUAUUUGCACUUAUUUUGUAU--UGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUG--
.(((((((((..((((((...........--((((((.....)))))).........))))))........(((((((((...))))))))))))))))))-- ( -25.15)
>DroSec_CAF1 148054 101 + 1
UUAGAAUGUUAUUUGCACUCAUUUUGUAU--UGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCA
.(((((((((..((((((...........--((((((.....)))))).........))))))........(((((((((...)))))))))))))))))).. ( -25.65)
>DroSim_CAF1 149106 101 + 1
UUAGAAUGUUAUUUGCACUUAUUUUGUAU--GGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCA
.(((((((((..((((((...........--.(((((.....)))))..........))))))........(((((((((...)))))))))))))))))).. ( -24.95)
>DroEre_CAF1 154084 103 + 1
UUAAGAUAGUAUUUUCACACAUAUUGUUUCCCGCCUAAUAAGUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCG
...(((((((((........)))))))))..(((..(((....(((((.((((......)))).)))))..(((((((((...)))))))))...)))..))) ( -21.30)
>DroYak_CAF1 153678 103 + 1
UUAAAAUGUUAUUUUCACAUAUAUUGUUUCCUGCCUAAUAAUUGACUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUGCGAUUGGUAAACGUUUUGCG
.(((((((((......................(((..............................)))...(((((((((...)))))))))))))))))).. ( -18.11)
>consensus
UUAGAAUGUUAUUUGCACUUAUUUUGUAU__UGGCUAAUAAUUGGCUAUUUAUCCCUGUGUAACUGGCUUGUACCGAUCGCUCCGAUUGGUAAACGUUUUGCA
.(((((((((.................................(((((.((((......)))).)))))..(((((((((...)))))))))))))))))).. (-18.58 = -18.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:10 2006