Locus 2778

Sequence ID 3L_DroMel_CAF1
Location 7,870,109 – 7,870,199
Length 90
Max. P 0.648431
window4337

overview

Window 7

Location 7,870,109 – 7,870,199
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 86.45
Mean single sequence MFE -16.45
Consensus MFE -16.33
Energy contribution -15.28
Covariance contribution -1.05
Combinations/Pair 1.33
Mean z-score -1.09
Structure conservation index 0.99
SVM decision value 0.24
SVM RNA-class probability 0.648431
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7870109 90 - 23771897
UAAAAACCCUAUCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCGUUCAAAGCAU
.................---------------....((((.....((((((((....)).))))))..((..(((((((.....))))))).))..))))..... ( -15.80)
>DroSec_CAF1 23184 90 - 1
UAAAAACCCUACCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCAUUCAAAGCUU
.................---------------....((((.....((((((((....)).))))))..((..(((((((.....))))))).))..))))..... ( -15.80)
>DroSim_CAF1 23366 90 - 1
UAAAAACCCUACCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCAUUCAAAGCAU
.................---------------....((((.......))))......(((((((((..((..(((((((.....))))))).)))))).))))). ( -16.00)
>DroEre_CAF1 26579 89 - 1
UAA-AACCCUAUCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCGUUCAGAGCAU
...-.............---------------..............(((((((...(((((......)))))(((((((.....)))))))..))))..)))... ( -15.70)
>DroYak_CAF1 16218 90 - 1
UAAAAACCCUAUCUUAC---------------CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGGCCCUAAGUCGUAAGGCAUUCAAAGCAU
.................---------------....((((.......))))......(((((((((..((..(((((((.....))))))).)))))).))))). ( -15.40)
>DroAna_CAF1 27012 102 - 1
AAA-AACCCC-CCUUACUACUUACUACUACUAUAUAUUGAUUAAAGCUCAACGAU-CUGCUUGAGUAGGCAUUUACGGCCCUAAGCCGUAGUGUAAUCGAAGCAU
...-......-.........................((((((...((((((....-....))))))..(((((.(((((.....))))))))))))))))..... ( -20.00)
>consensus
UAAAAACCCUACCUUAC_______________CAUAUUGAUUAUAACUCAACGAUUUUGCUUGAGUAGGCAAUUACGACCCUAAGUCGUAAGGCAUUCAAAGCAU
....................................((((.....((((((((....)).))))))..((..(((((((.....))))))).))..))))..... (-16.33 = -15.28 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006