Locus 2773

Sequence ID 3L_DroMel_CAF1
Location 7,849,831 – 7,849,923
Length 92
Max. P 0.967456
window4331

overview

Window 1

Location 7,849,831 – 7,849,923
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 88.91
Mean single sequence MFE -36.10
Consensus MFE -31.16
Energy contribution -31.96
Covariance contribution 0.80
Combinations/Pair 1.17
Mean z-score -1.91
Structure conservation index 0.86
SVM decision value 1.61
SVM RNA-class probability 0.967456
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7849831 92 - 23771897
UACGGAAGUUUCACUGUACUUUUCGGCGAUCGCCGAGGGUGAUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU
.((....))....(((((((((((((((((((((...))))))))))))))))(((((((......))).(((...)))))))..))))).. ( -40.20)
>DroSec_CAF1 5637 92 - 1
UACUGAAGUUUCACUGUAGUUUUCGGCGAUCGCCGAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU
.............(((((((((((((((((((((...))))))))))))))..(((((((......))).(((...)))))))))))))).. ( -38.20)
>DroSim_CAF1 5686 92 - 1
UACUGAAGUUUCACUGUAGUUUUCGGCGAUCGCCGAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU
.............(((((((((((((((((((((...))))))))))))))..(((((((......))).(((...)))))))))))))).. ( -38.20)
>DroEre_CAF1 6352 90 - 1
UACUGAUGCUUCACUGUAGU-UUCGCCGAUCGC-GAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU
...(((....)))(((((((-((((.(((((((-....))))))).))))...(((((((......))).(((...)))))))))))))).. ( -29.50)
>DroAna_CAF1 7273 92 - 1
UAUCGAUGUCCUACUGUAGCGGCUGCUGAUCGCCGAGGGUGGUCGCUGAAGGGGAACGCUUCGAAACGCAGCGAAACGCGUUCACUGCGGGC
..((((..((((.((.(((((((..((..((...)).))..))))))).)))))).....))))..(((((.(((.....))).)))))... ( -34.40)
>consensus
UACUGAAGUUUCACUGUAGUUUUCGGCGAUCGCCGAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU
.............((((((((((((((((((((.....)))))))))))))).(((((((......))).(((...))))))).)))))).. (-31.16 = -31.96 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:20 2006