Locus 2770

Sequence ID 3L_DroMel_CAF1
Location 7,840,779 – 7,840,874
Length 95
Max. P 0.997524
window4327

overview

Window 7

Location 7,840,779 – 7,840,874
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 92.98
Mean single sequence MFE -21.60
Consensus MFE -19.86
Energy contribution -19.74
Covariance contribution -0.12
Combinations/Pair 1.15
Mean z-score -1.95
Structure conservation index 0.92
SVM decision value 2.88
SVM RNA-class probability 0.997524
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7840779 95 + 23771897
UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCUUAAGGCUCCGCCGCUAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAAAA-
.....(((((((((.((........)))))((((((((((.(((...)))..))))))))))........((((....)))).....))))))..- ( -23.40)
>DroSec_CAF1 51058 93 + 1
UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCAUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAA---
.....(((((((((.((........)))))(((((((....(((......)))..)))))))........((((....)))).....))))))--- ( -19.80)
>DroSim_CAF1 62410 93 + 1
UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCUUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAA---
.....(((((((((.((........)))))(((((((((..(((......))))))))))))........((((....)))).....))))))--- ( -21.10)
>DroEre_CAF1 51067 96 + 1
UCUAAUUUUGCGUGUGCGUACAUCAGCCACUAUUUGCUUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCAACAUAGAAAUGGAAAUGGCGAAGAAA
.....(((((((((.((........)))))(((((((((..(((......)))))))))))).........................))))))... ( -20.80)
>DroYak_CAF1 52507 96 + 1
UCUAAUUUUGCGUGUGCGUACAUAAGCCACUCUUUGCUUAAGGCUCCGCCGCCAGGUAAAUACAAAAUCGCCAUAGAAAUGGAAAUUGCAAAAAAA
.....((((((((((...(((.(((((........))))).(((......)))..))).))))..(((..((((....))))..)))))))))... ( -22.90)
>consensus
UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCUUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAAAA_
.....(((((((((.((........)))))(((((((((..(((......))))))))))))........((((....)))).....))))))... (-19.86 = -19.74 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:16 2006