Locus 2769

Sequence ID 3L_DroMel_CAF1
Location 7,836,465 – 7,836,570
Length 105
Max. P 0.575395
window4326

overview

Window 6

Location 7,836,465 – 7,836,570
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 94.10
Mean single sequence MFE -26.00
Consensus MFE -22.32
Energy contribution -22.32
Covariance contribution 0.00
Combinations/Pair 1.18
Mean z-score -1.25
Structure conservation index 0.86
SVM decision value 0.08
SVM RNA-class probability 0.575395
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7836465 105 - 23771897
CACACGCAGGCUUAAUUAGCAGCCACAACAAUCAAUUGUGGUACCCCCAUAUUUACUGCAUUUCAGCCCACUGUGUCAAGUGAAUGGGAUGGGUAUUCAAUAAAU
........((((........))))..........((((.(((((((((.((((((((......(((....))).....))))))))))..))))))))))).... ( -25.60)
>DroSec_CAF1 46704 105 - 1
CACACGCAGGCUUAAUUAGCAGCCACAACAAUCAAUUGCGGUACCCCCAUAUUUGCUGCAUUUCAGCCCACUGUGUCAAGUGAAUGGGAUGGGUAUUCAAUAAAU
........((((........))))..........((((.(((((((((((....((((.....)))).((((......)))).))))...))))))))))).... ( -25.80)
>DroSim_CAF1 58034 105 - 1
CACACGCAGGCUUAAUUAGCAGCCACAACAAUCAAUUGCGGUACCCCCAUAUUUGCUGCAUUUCGGCCCACUGUGUCAAGUGAAUGGGCUGGGUAUUCAAUAAAU
........((((........))))..........((((.(((((((((((....((((.....)))).((((......)))).))))...))))))))))).... ( -25.10)
>DroEre_CAF1 46779 105 - 1
CACACGCAGGCUUAAUUAGCAGCCACAACAAUCAAUUGUGGCACCCACAUAUUUGCAUCAUUUCAGCCCACUGUGACAAGUGAAUGGGAUGGGUACUCAGUAAAC
.....(((((((.....))).(((((((.......)))))))..........)))).((((..((...((((......))))..))..))))............. ( -27.90)
>DroYak_CAF1 48112 105 - 1
CACACGCAGGCUUAAUUAGCAGCCACAACAAUCAAUUGUGGUGCCCCCAUAUUUGCAUCAUUUCAGCCCACUGUGUCAAGUGAAUGGGAUGGGUAUUCAAUAAGU
.....(((((((.....))).(((((((.......)))))))..........)))).((((..((...((((......))))..))..))))............. ( -25.60)
>consensus
CACACGCAGGCUUAAUUAGCAGCCACAACAAUCAAUUGUGGUACCCCCAUAUUUGCUGCAUUUCAGCCCACUGUGUCAAGUGAAUGGGAUGGGUAUUCAAUAAAU
........((((........))))..........((((.(((((((((.((((((((......(((....))).....))))))))))..))))))))))).... (-22.32 = -22.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:15 2006