Locus 2768

Sequence ID 3L_DroMel_CAF1
Location 7,834,521 – 7,834,627
Length 106
Max. P 0.708319
window4325

overview

Window 5

Location 7,834,521 – 7,834,627
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 85.23
Mean single sequence MFE -19.35
Consensus MFE -13.08
Energy contribution -12.80
Covariance contribution -0.28
Combinations/Pair 1.33
Mean z-score -2.02
Structure conservation index 0.68
SVM decision value 0.37
SVM RNA-class probability 0.708319
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7834521 106 + 23771897
UAAAAAAAUCUAAAGGGUACUUAAAUUCCGCUAAAGGAAGAAAAGGCAUUUGCCCAGACCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU
........(((...((((((((...((((......))))...)))(((((.........(((((...........))))).....)))))))))).)))....... ( -21.24)
>DroSec_CAF1 44772 100 + 1
UAAAUAAAUCUAAAGGGUACUCAAAUUCCGCUAAAGGAAGAAAAGG------CCCAUGCCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU
........(((...(((((......((((......)))).....((------(....)))((((...........))))...........))))).)))....... ( -18.50)
>DroSim_CAF1 56098 106 + 1
UAAAUAAAUCUAAAGGGUACUCCAAUUCCGCUAAAGGAAGAAAAGGCAUUUGCCCAUGCCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCGGAGAAACCAUU
..............((...((((..((((......)))).....((((((.((....))(((((...........))))).....))))))...))))...))... ( -23.50)
>DroEre_CAF1 44760 95 + 1
UAAAUCAAUCGAAAGAGUACUCAAAUUCCGAAAA--GGAGAAA-------UUCCAAGACCGUUUGCAAAAUAAAAAGACGAAA--CCUGCUACCUGAGAAACCAUU
........((....))...((((..((((.....--))))...-------.........(((((...........)))))...--.........))))........ ( -12.80)
>DroYak_CAF1 45942 106 + 1
UAAAUCAAUUUAAAGGGUACUCGAAUUCCGCAAAAGGCAGAAAAGGCAUUUGCCUAGAACGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU
..............((...((((......(((..(((((((.......)))))))....(((((...........))))).......)))....))))...))... ( -20.70)
>consensus
UAAAUAAAUCUAAAGGGUACUCAAAUUCCGCUAAAGGAAGAAAAGGCAUUUGCCCAGACCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU
..............((...((((..((((......))))....................(((((...........)))))..............))))...))... (-13.08 = -12.80 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:14 2006