Locus 2760

Sequence ID 3L_DroMel_CAF1
Location 7,789,971 – 7,790,062
Length 91
Max. P 0.992458
window4314

overview

Window 4

Location 7,789,971 – 7,790,062
Length 91
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -24.40
Consensus MFE -23.92
Energy contribution -24.29
Covariance contribution 0.37
Combinations/Pair 1.07
Mean z-score -2.36
Structure conservation index 0.98
SVM decision value 2.33
SVM RNA-class probability 0.992458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7789971 91 + 23771897
UUCUCCUCCUCGGUGUUUAGUUAAUUUGCUUUUA-----GUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGU-UUCUUGU
..((((((..(((((((..((...((((((((.(-----((.((((........)))).)))))))))))..))))))))).)))))).-....... ( -27.40)
>DroSec_CAF1 30163 91 + 1
UUCUCCUCCUCGGUGUUUAGUUAAUUUGCUUUUA-----GUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGU-UUCUUGU
..((((((..(((((((..((...((((((((.(-----((.((((........)))).)))))))))))..))))))))).)))))).-....... ( -27.40)
>DroEre_CAF1 30602 93 + 1
UUCUCCUCCUUUGUGUUUAGUUAAUCUGCUUUUAGU----UUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGUUUUCUUGU
..((((((....(((((..((...((((((((.(((----..((((........)))).)))))))))))..)))))))...))))))......... ( -21.70)
>DroYak_CAF1 32387 97 + 1
UUCUCCUCCUCUGUGUUUAGUUAAUUUGCUUUUUUUUUAGUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGUUUUCUUGU
..((((((..(.(((((..((...((((((((..(.((.(((((......))))).)).)..))))))))..))))))).).))))))......... ( -21.10)
>consensus
UUCUCCUCCUCGGUGUUUAGUUAAUUUGCUUUUA_____GUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGU_UUCUUGU
..((((((..(((((((..((...((((((((.......(((((......))))).......))))))))..))))))))).))))))......... (-23.92 = -24.29 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:04 2006