Locus 2757

Sequence ID 3L_DroMel_CAF1
Location 7,784,047 – 7,784,144
Length 97
Max. P 0.500000
window4310

overview

Window 0

Location 7,784,047 – 7,784,144
Length 97
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 76.50
Mean single sequence MFE -30.92
Consensus MFE -16.87
Energy contribution -16.87
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.55
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7784047 97 + 23771897
GUGU--------UGGGGGUGCUAGUUUGCCAGUGGGCGUCAUUUAUCGUAUGAUGCGCAUUUCCGGCGCCACUCA---ACAGACUACAGCCAUAUAAACACC---AAGCAA
((((--------(..((.((.(((((((..((((((((((((.......)))))))((.......)).)))))..---.))))))))).)).....))))).---...... ( -33.30)
>DroPse_CAF1 29074 90 + 1
G---------------U------GUGUUGUAGUGGGCGUCAUUUAUCGUAUGAUGCGCAUUUCCGGCGCCACUCAGCAACAGACGACAAGCAAACGGACACUCACAGACAG
(---------------(------.((((((((((((((((((.......)))))))((.......)).)))))..)))))).))........................... ( -26.20)
>DroSec_CAF1 24314 97 + 1
GUCU--------UGGGGGUGCUAGUUUGCCAGUGGGCGUCAUUUAUCGUAUGAUGCGCAUUUCCGGCGCCACUCA---ACAGACUACAGCCAUAUAAACACC---AAGCAA
(.((--------(((.(((..(((((((..((((((((((((.......)))))))((.......)).)))))..---.)))))))..))).........))---)))).. ( -32.30)
>DroEre_CAF1 24700 88 + 1
-----------------GUGCUAGUUUGGCAGUGGGCGUCAUUUAUCGUAUGAUGCGCAUUUCCGGCGCCACUCA---ACAGUCUACAGCCAUAUAAACACC---AAGCAA
-----------------.((((.....((.((((.(((((((.......))))))).)))).))(((...(((..---..))).....)))...........---.)))). ( -25.00)
>DroYak_CAF1 26327 105 + 1
GUGUGGGGGUGUGGGGGGUGCUAGUUUGCUAGUGGGCGUCAUUUAUCGUAUGAUGCGCAUUUCCGGCGCCACUCA---ACAGACUACAGCUACAUGAACAGC---AAGCAA
((.(((((((((.((..(((((((....)))....(((((((.......)))))))))))..)).))))).))))---))........(((........)))---...... ( -38.40)
>DroPer_CAF1 29589 97 + 1
GUGU--------UUUGU------GUGUUGUAGUGGGCGUCAUUUAUCGUAUGAUGCGCAUUUCCGGCGCCACUCAGCAACAGACGACAAGCAAACGGACACUCACAGACAG
((((--------(((((------.((((((((((((((((((.......)))))))((.......)).)))))..)))))).))))..........))))).......... ( -30.30)
>consensus
GUGU________UGGGGGUGCUAGUUUGCCAGUGGGCGUCAUUUAUCGUAUGAUGCGCAUUUCCGGCGCCACUCA___ACAGACUACAGCCAUAUAAACACC___AAGCAA
.......................((.....((((((((((((.......)))))))((.......)).))))).....))............................... (-16.87 = -16.87 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:00 2006