Locus 2756

Sequence ID 3L_DroMel_CAF1
Location 7,781,235 – 7,781,355
Length 120
Max. P 0.990664
window4309

overview

Window 9

Location 7,781,235 – 7,781,355
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 78.09
Mean single sequence MFE -27.63
Consensus MFE -16.94
Energy contribution -18.57
Covariance contribution 1.62
Combinations/Pair 1.27
Mean z-score -2.72
Structure conservation index 0.61
SVM decision value 2.23
SVM RNA-class probability 0.990664
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7781235 120 + 23771897
UGCUAUCUUAUGAAAAUGAGUCAACAAAUGAUUCAUCUUCAUGAACAUUCAUGUACCCAAAUACGAUAUGAGCAACAGCUCAGGUGUGGAAAUUCCUACAAAGUUGUUUAAGUCUUUCAC
.(((...(((((((.((((((((.....)))))))).))))))).(((...((((......))))..))))))(((((((....(((((......))))).)))))))............ ( -29.10)
>DroSec_CAF1 21575 105 + 1
UGCUAUCUUAUGAAAAUGAGUCAACAAAUGAUUCAUCUU---------------ACCUAAAUACGAUAUGAGCAACAGUUCAGGUGUGGAAAUGCCUACAAAGUUCUUCAAGUCUUUCAC
..........(((((((((((((.....))))))))...---------------..........(((.((((.(((.....((((((....)))))).....))).)))).)))))))). ( -22.30)
>DroYak_CAF1 23166 114 + 1
UACUAUCUCACGAAAGUGAGUCAGCAAGUGAUUCAACUUUCUCUACAUU----UACCCAAAUACAUGAUGAGCCACAGCUCAGGUAUGGAAAUGCCAGCAAAGUUGUUCAAGUCUUUU--
..((..(((((....)))))..))....(((..(((((((((...((((----(.((...((((....(((((....))))).)))))))))))..)).))))))).)))........-- ( -31.50)
>consensus
UGCUAUCUUAUGAAAAUGAGUCAACAAAUGAUUCAUCUU__U__ACAUU____UACCCAAAUACGAUAUGAGCAACAGCUCAGGUGUGGAAAUGCCUACAAAGUUGUUCAAGUCUUUCAC
.(((..(((((....))))).((((...........................................(((((....)))))(((((....)))))......))))....)))....... (-16.94 = -18.57 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:59 2006