Locus 2749

Sequence ID 3L_DroMel_CAF1
Location 7,744,580 – 7,744,672
Length 92
Max. P 0.632700
window4298

overview

Window 8

Location 7,744,580 – 7,744,672
Length 92
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 77.59
Mean single sequence MFE -23.08
Consensus MFE -10.95
Energy contribution -10.90
Covariance contribution -0.05
Combinations/Pair 1.14
Mean z-score -2.03
Structure conservation index 0.47
SVM decision value 0.20
SVM RNA-class probability 0.632700
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7744580 92 - 23771897
----C-----AAC--CACCUUCCUC---CAACCACCG--AGCAGUGGUUGUUAUGGCAUUCAGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA
----(-----(((--(((....(((---........)--))..)))))))............((..(((((((((((......)-)))))).)))).)).......... ( -21.70)
>DroSec_CAF1 9087 92 - 1
----C-----AAC--CUACUUCCUC---CAACCACCG--GGCAGUGGUUGUUAUGGCAUUCAGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA
----.-----...--......((..---(((((((..--....)))))))....))......((..(((((((((((......)-)))))).)))).)).......... ( -21.40)
>DroEre_CAF1 11006 92 - 1
----C-----GAA--CACCUUCCUC---CAACCACCG--AGCAGUGGUUGUUAUGGCAUUCGGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA
----.-----(((--((((..((..---(((((((..--....)))))))....)).....)))).(((((((((((......)-)))))).)))).........))). ( -25.90)
>DroYak_CAF1 9582 99 - 1
--UCCAAAAAAUA--CACCUUGCUC---CAACCACCG--AGCAGUGGUUGUUAUGGCAUUCGGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA
--...........--((((.((((.---(((((((..--....)))))))....))))...)))).(((((((((((......)-)))))).))))............. ( -28.60)
>DroMoj_CAF1 19000 99 - 1
----U-----GUCUCUGCACUCAUACAACAACAGUUCAUUUAAAAGGUUGUUAUGGCAUUCGCUG-UCGCAUUUAGUAACAGGCGCAAAAUAACGUAGCAUACUUUUUA
----.-----..............................(((((((((((((((..((((((((-(..(.....)..))).)))...)))..))))))).)))))))) ( -19.00)
>DroAna_CAF1 16269 90 - 1
CUUCCA-----A-----ACCCACUC---CAA---GCG--ACCGGUGGUUGUUAUGGCAUUCGCUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA
......-----.-----.......(---(((---(((--(((...))))))).))).....(((..(((((((((((......)-)))))).))))))).......... ( -21.90)
>consensus
____C_____AAC__CACCUUCCUC___CAACCACCG__AGCAGUGGUUGUUAUGGCAUUCGGUGAACGCAUUUUGUAACAUGA_CAAAAUAGCGUAGCAUACAUUUCA
..........................................((((..(((((((((.(((...))).))((((((.........))))))..)))))))..))))... (-10.95 = -10.90 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:48 2006