Locus 2739

Sequence ID 3L_DroMel_CAF1
Location 7,693,816 – 7,693,914
Length 98
Max. P 0.584621
window4286

overview

Window 6

Location 7,693,816 – 7,693,914
Length 98
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -15.69
Consensus MFE -10.22
Energy contribution -10.38
Covariance contribution 0.16
Combinations/Pair 1.12
Mean z-score -1.63
Structure conservation index 0.65
SVM decision value 0.10
SVM RNA-class probability 0.584621
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7693816 98 - 23771897
CAACAAC-------AAAGUUGACCGCGAAUUAAUCUUAACUACAAGCAACAAAUAAAAUGGGCCAACUACGUAUGUAUUUAAUUAAUACAAC---AUCAUGAUCAUAG
.......-------..(((((.((((...................))..((.......)))).)))))..((.((((((.....))))))))---............. ( -10.61)
>DroSec_CAF1 55086 101 - 1
CAACAAC-------AAAGUUGACCGUGAAGUAAUCUCAACGCCAAGCAACAAAUAAAAUGGGUCAACUACGUAUGUAUUUCAUUAAUACAACAAUAACAUGAUCAUAG
.......-------..((((((((((..((....))..))((...)).............))))))))..((.((((((.....))))))))................ ( -17.50)
>DroSim_CAF1 68154 101 - 1
CAACAAC-------AAAGUUGACCGUGAAGUAAUCUCAACGACAAGCAACAAAUAAAAUGGGUCAACUGCGUAUGUAUUUAAUUAAUACAACAACAUCAUGAUCAUAG
.....((-------..((((((((((..((....))..)).........((.......))))))))))..)).((((((.....)))))).................. ( -16.30)
>DroEre_CAF1 68122 105 - 1
--AAAACUAAAACAAAAGUUGAUCUUGAAGUAAUCUUAGCGAUCAGCCACA-AUAAAAGGGGUCAACUUAGUAUGUACUUAAUAAGUACAACAUUAUUAUCAACAUAU
--.............(((((((((((.(((....))).((.....))....-......))))))))))).((((((...((((((........))))))...)))))) ( -19.20)
>DroYak_CAF1 70150 105 - 1
UAACAACC--CACUAAAGUUGACCAUGAAGUAAUCUCAACGCUCAGCCACA-AUAAAUUGGACCAACUACGUGUGUAUUUAAUUAAUACAACAUCAUUAUCAGCAUAG
........--.......(((((..((((.((.......(((.....(((..-......)))........))).((((((.....)))))))).))))..))))).... ( -14.82)
>consensus
CAACAAC_______AAAGUUGACCGUGAAGUAAUCUCAACGACAAGCAACAAAUAAAAUGGGUCAACUACGUAUGUAUUUAAUUAAUACAACAACAUCAUGAUCAUAG
................((((((((....................................))))))))..((.((((((.....))))))))................ (-10.22 = -10.38 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:36 2006